Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GCB94_RS04005 Genome accession   NZ_CP045306
Coordinates   639403..639993 (-) Length   196 a.a.
NCBI ID   WP_003632969.1    Uniprot ID   -
Organism   Legionella longbeachae strain B1445CHC     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634403..644993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCB94_RS03980 (GCB94_03960) prmC 634495..635301 (-) 807 WP_003632974.1 peptide chain release factor N(5)-glutamine methyltransferase -
  GCB94_RS03985 (GCB94_03965) prfA 635294..636382 (-) 1089 WP_012978819.1 peptide chain release factor 1 -
  GCB94_RS03990 (GCB94_03970) hemA 636366..637640 (-) 1275 WP_003632972.1 glutamyl-tRNA reductase -
  GCB94_RS03995 (GCB94_03975) - 638017..638304 (+) 288 WP_003632971.1 hypothetical protein -
  GCB94_RS04000 (GCB94_03980) - 638316..639380 (+) 1065 WP_003632970.1 site-2 protease family protein -
  GCB94_RS04005 (GCB94_03985) comFC 639403..639993 (-) 591 WP_003632969.1 ComF family protein Machinery gene
  GCB94_RS04010 (GCB94_03990) bioC 640145..641002 (+) 858 WP_003632968.1 malonyl-ACP O-methyltransferase BioC -
  GCB94_RS04015 (GCB94_03995) - 641189..641980 (-) 792 WP_003632966.1 LirA/MavJ family T4SS effector -
  GCB94_RS04020 (GCB94_04000) - 642203..643084 (-) 882 WP_003632965.1 polyprenyl synthetase family protein -
  GCB94_RS04025 (GCB94_04005) - 643077..643295 (-) 219 WP_003632964.1 exodeoxyribonuclease VII small subunit -
  GCB94_RS04030 (GCB94_04010) radA 643471..644823 (+) 1353 WP_003632963.1 DNA repair protein RadA -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22401.26 Da        Isoelectric Point: 9.6053

>NTDB_id=393300 GCB94_RS04005 WP_003632969.1 639403..639993(-) (comFC) [Legionella longbeachae strain B1445CHC]
MPLLGPGCHHCAYPLPDTQFLVCGHCIKNPPSFDRAFIKYTFEEPLRTLLHQFKYHNGLYLTSFLSYLIFKSLSSQVEMP
QCLIPVPMHPQRIKRRGFNQAAILARSLAKKFKLPCDLFSCQKTLNTKPQAGLDEKQRKINLRSAFVTHQLPYQHVAIID
DLLTTGNTANELAYTLKKSGVKQVDVWCCARTIEKH

Nucleotide


Download         Length: 591 bp        

>NTDB_id=393300 GCB94_RS04005 WP_003632969.1 639403..639993(-) (comFC) [Legionella longbeachae strain B1445CHC]
ATGCCTTTGTTAGGTCCTGGTTGTCACCATTGTGCTTATCCCTTACCAGATACCCAATTTCTCGTCTGTGGGCATTGTAT
TAAAAATCCACCCTCTTTTGACCGCGCATTCATTAAGTACACTTTTGAAGAACCCTTGCGTACCCTTTTACACCAATTCA
AATATCATAATGGTCTTTATCTTACTTCGTTTCTAAGCTATTTAATTTTTAAATCACTATCAAGCCAAGTGGAAATGCCT
CAATGTTTGATCCCTGTCCCCATGCATCCACAACGAATTAAACGGCGTGGATTTAACCAAGCAGCCATCTTGGCTCGTTC
TTTAGCTAAAAAATTTAAACTCCCGTGCGATTTATTCAGTTGTCAAAAAACGCTCAACACCAAACCGCAAGCAGGATTAG
ATGAAAAACAAAGGAAAATAAATTTACGTTCAGCCTTTGTTACACACCAACTACCTTATCAACATGTTGCCATTATCGAT
GATCTACTAACCACCGGTAATACGGCAAATGAACTGGCGTACACTTTAAAGAAATCTGGAGTGAAACAGGTGGATGTTTG
GTGTTGCGCACGCACCATAGAGAAACACTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila strain ERS1305867

59.694

100

0.597
  comFC Legionella pneumophila str. Paris

59.694

100

0.597
  comF Haemophilus influenzae 86-028NP

35.859

100

0.362

Multiple sequence alignment