Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   HPE59_RS07455 Genome accession   NZ_CP053659
Coordinates   1448778..1449959 (-) Length   393 a.a.
NCBI ID   WP_002851165.1    Uniprot ID   Q7WYI5
Organism   Campylobacter jejuni strain 2016-IZSVE-19-111250     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443778..1454959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE59_RS07420 (HPE59_07425) - 1443829..1444116 (-) 288 WP_002865289.1 hypothetical protein -
  HPE59_RS07425 (HPE59_07430) - 1444196..1444390 (-) 195 WP_002843339.1 hypothetical protein -
  HPE59_RS07430 (HPE59_07435) - 1444400..1444720 (-) 321 WP_038400980.1 hypothetical protein -
  HPE59_RS07435 (HPE59_07440) - 1444801..1445430 (-) 630 WP_052778354.1 S24 family peptidase -
  HPE59_RS07440 (HPE59_07445) - 1445515..1447230 (-) 1716 WP_052778355.1 P-loop NTPase fold protein -
  HPE59_RS07445 (HPE59_07450) - 1447676..1448017 (+) 342 Protein_1459 TIGR02757 family protein -
  HPE59_RS07450 (HPE59_07455) - 1448021..1448785 (+) 765 WP_002851426.1 TSUP family transporter -
  HPE59_RS07455 (HPE59_07460) ctsF 1448778..1449959 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  HPE59_RS07460 (HPE59_07465) ctsE 1449956..1451515 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  HPE59_RS07465 (HPE59_07470) ctsX 1451505..1452092 (-) 588 WP_002851370.1 membrane protein Machinery gene
  HPE59_RS07470 (HPE59_07475) ctsP 1452096..1452704 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  HPE59_RS07475 (HPE59_07480) ctsD 1452697..1454109 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HPE59_RS07480 (HPE59_07485) ctsR 1454087..1454398 (-) 312 WP_015016496.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45764.35 Da        Isoelectric Point: 9.0938

>NTDB_id=393221 HPE59_RS07455 WP_002851165.1 1448778..1449959(-) (ctsF) [Campylobacter jejuni strain 2016-IZSVE-19-111250]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=393221 HPE59_RS07455 WP_002851165.1 1448778..1449959(-) (ctsF) [Campylobacter jejuni strain 2016-IZSVE-19-111250]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

99.746

0.99