Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   HPE59_RS07470 Genome accession   NZ_CP053659
Coordinates   1452096..1452704 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   Q0P8E4
Organism   Campylobacter jejuni strain 2016-IZSVE-19-111250     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447096..1457704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE59_RS07445 (HPE59_07450) - 1447676..1448017 (+) 342 Protein_1459 TIGR02757 family protein -
  HPE59_RS07450 (HPE59_07455) - 1448021..1448785 (+) 765 WP_002851426.1 TSUP family transporter -
  HPE59_RS07455 (HPE59_07460) ctsF 1448778..1449959 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  HPE59_RS07460 (HPE59_07465) ctsE 1449956..1451515 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  HPE59_RS07465 (HPE59_07470) ctsX 1451505..1452092 (-) 588 WP_002851370.1 membrane protein Machinery gene
  HPE59_RS07470 (HPE59_07475) ctsP 1452096..1452704 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  HPE59_RS07475 (HPE59_07480) ctsD 1452697..1454109 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HPE59_RS07480 (HPE59_07485) ctsR 1454087..1454398 (-) 312 WP_015016496.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=393224 HPE59_RS07470 WP_002851464.1 1452096..1452704(-) (ctsP) [Campylobacter jejuni strain 2016-IZSVE-19-111250]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=393224 HPE59_RS07470 WP_002851464.1 1452096..1452704(-) (ctsP) [Campylobacter jejuni strain 2016-IZSVE-19-111250]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995