Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   GCU48_RS01085 Genome accession   NZ_CP045298
Coordinates   216824..217261 (-) Length   145 a.a.
NCBI ID   WP_152378761.1    Uniprot ID   -
Organism   Paenibacillus brasilensis strain KACC 13842     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 211824..222261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU48_RS01070 - 212697..213586 (-) 890 Protein_167 ABC transporter permease subunit -
  GCU48_RS01075 - 213825..215169 (-) 1345 Protein_168 hypothetical protein -
  GCU48_RS01080 - 215129..216542 (-) 1414 Protein_169 histidine kinase -
  GCU48_RS26700 - 216655..216807 (+) 153 WP_167518619.1 hypothetical protein -
  GCU48_RS01085 nucA/comI 216824..217261 (-) 438 WP_152378761.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  GCU48_RS01090 - 217401..217598 (+) 198 WP_025716774.1 hypothetical protein -
  GCU48_RS01095 - 217985..218287 (+) 303 WP_152378762.1 hypothetical protein -
  GCU48_RS01100 - 218359..220245 (-) 1887 WP_152378763.1 Ig-like domain-containing protein -
  GCU48_RS01105 - 220367..220789 (-) 423 WP_025716776.1 hypothetical protein -
  GCU48_RS01110 - 220806..221474 (-) 669 WP_025716777.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16098.20 Da        Isoelectric Point: 9.3695

>NTDB_id=393208 GCU48_RS01085 WP_152378761.1 216824..217261(-) (nucA/comI) [Paenibacillus brasilensis strain KACC 13842]
MKKKLLSFISVVLLAAGAYWFRGADLLTKTTEENPSSSAQFTLHFPTDRYPQTAQHIKEAIQTGKSSVCTIDREGAEQNR
KQSLAGVPARKGYDRDEWPMAMCSEGGKGANVKYIAPKDNRGAGSWVSHQLDEYEDGTRVKFVVK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=393208 GCU48_RS01085 WP_152378761.1 216824..217261(-) (nucA/comI) [Paenibacillus brasilensis strain KACC 13842]
TTGAAGAAAAAGTTGTTAAGTTTTATATCCGTAGTACTATTGGCAGCGGGCGCGTATTGGTTTAGAGGAGCCGATCTTCT
TACGAAAACAACAGAGGAAAATCCATCCTCATCGGCGCAGTTTACGCTGCACTTTCCGACAGATCGTTATCCTCAAACAG
CACAGCATATCAAGGAAGCGATTCAGACGGGAAAATCATCGGTGTGCACTATTGATCGTGAAGGAGCAGAGCAAAATCGC
AAGCAGTCGCTTGCAGGAGTTCCTGCTCGCAAAGGATACGATCGAGATGAATGGCCGATGGCGATGTGTTCAGAGGGTGG
CAAAGGTGCAAATGTCAAATACATAGCTCCTAAGGATAACCGTGGGGCAGGGTCATGGGTAAGTCATCAATTGGATGAGT
ACGAAGATGGAACTCGCGTAAAATTCGTCGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.8

86.207

0.524

Multiple sequence alignment