Detailed information NTG0393119

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GCS91_RS06330
• Genome accession: NZ_CP045291
• Coordinates: 1383076..1383969 (-)
• Length: 297 a.a.
• NCBI ID: WP_154833621.1
• Uniprot ID: -
• Organism: Delftia tsuruhatensis strain TR1180
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1378076..1388969

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GCS91_RS06300 (GCS91_06300)	argJ	1378402..1379634 (+)	1233	WP_016445603.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
GCS91_RS06305 (GCS91_06305)	-	1379800..1380756 (+)	957	WP_154833619.1	ATP-binding protein	-
GCS91_RS06310 (GCS91_06310)	-	1380807..1381313 (+)	507	WP_016445605.1	(deoxy)nucleoside triphosphate pyrophosphohydrolase	-
GCS91_RS06315 (GCS91_06315)	-	1381324..1381578 (-)	255	WP_016451023.1	DNA gyrase inhibitor YacG	-
GCS91_RS06320 (GCS91_06320)	zapD	1381578..1382333 (-)	756	WP_016445607.1	cell division protein ZapD	-
GCS91_RS06325 (GCS91_06325)	coaE	1382423..1383061 (-)	639	WP_154833620.1	dephospho-CoA kinase	-
GCS91_RS06330 (GCS91_06330)	pilD	1383076..1383969 (-)	894	WP_154833621.1	prepilin peptidase	Machinery gene
GCS91_RS06335 (GCS91_06335)	pilC	1383969..1385186 (-)	1218	WP_017405526.1	type II secretion system F family protein	Machinery gene
GCS91_RS06340 (GCS91_06340)	pilB	1385225..1386967 (-)	1743	WP_034364744.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GCS91_RS06350 (GCS91_06350)	-	1387204..1388133 (-)	930	WP_154836321.1	polyprenyl synthetase family protein	-
GCS91_RS06355 (GCS91_06355)	rplU	1388364..1388675 (+)	312	WP_012207284.1	50S ribosomal protein L21	-
GCS91_RS06360 (GCS91_06360)	rpmA	1388691..1388948 (+)	258	WP_012207283.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 31842.41 Da
• Isoelectric Point: 7.2386

>NTDB_id=393119 GCS91_RS06330 WP_154833621.1 1383076..1383969(-) (pilD) [Delftia tsuruhatensis strain TR1180]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEKSSSSATPSPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGITPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL

Nucleotide

• Length: 894 bp

>NTDB_id=393119 GCS91_RS06330 WP_154833621.1 1383076..1383969(-) (pilD) [Delftia tsuruhatensis strain TR1180]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAACAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAAGAGAAATCTTCATCCTCCG
CCACGCCATCGCCCGCCACAGCGCCGCCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGCCATGCCATCCACTGGTACGAGAATATTCCCGTGCTCAGTTATCTGGCGCTGCGAGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCA
TCACGCCCACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCCTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAGGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-131)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.59	95.286	0.492
pilD	Vibrio campbellii strain DS40M4	46.416	98.653	0.458
pilD	Acinetobacter nosocomialis M2	44.364	92.593	0.411
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411
pilD	Acinetobacter baumannii D1279779	44	92.593	0.407