Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FDZ14_RS06560 Genome accession   NZ_CP045272
Coordinates   1140794..1142035 (+) Length   413 a.a.
NCBI ID   WP_047930763.1    Uniprot ID   A0A6M6DMD3
Organism   Priestia megaterium strain FDU301     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1135794..1147035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDZ14_RS06535 (FDZ14_06520) - 1136996..1137721 (+) 726 WP_013084748.1 SDR family oxidoreductase -
  FDZ14_RS06540 (FDZ14_06525) - 1137787..1138047 (+) 261 WP_013058809.1 DUF3243 domain-containing protein -
  FDZ14_RS06545 (FDZ14_06530) - 1138261..1139052 (+) 792 WP_034649265.1 DUF3388 domain-containing protein -
  FDZ14_RS06550 (FDZ14_06535) - 1139065..1140048 (+) 984 WP_228459493.1 RodZ domain-containing protein -
  FDZ14_RS06555 (FDZ14_06540) pgsA 1140193..1140777 (+) 585 WP_034649266.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FDZ14_RS06560 (FDZ14_06545) cinA 1140794..1142035 (+) 1242 WP_047930763.1 competence/damage-inducible protein A Machinery gene
  FDZ14_RS06565 (FDZ14_06550) recA 1142235..1143272 (+) 1038 WP_013058804.1 recombinase RecA Machinery gene
  FDZ14_RS06570 (FDZ14_06555) rny 1143553..1145112 (+) 1560 WP_013058803.1 ribonuclease Y -
  FDZ14_RS06575 (FDZ14_06560) - 1145194..1145991 (+) 798 WP_028410858.1 TIGR00282 family metallophosphoesterase -
  FDZ14_RS06580 (FDZ14_06565) spoVS 1146215..1146475 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44823.94 Da        Isoelectric Point: 4.9139

>NTDB_id=393055 FDZ14_RS06560 WP_047930763.1 1140794..1142035(+) (cinA) [Priestia megaterium strain FDU301]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIAAAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTSVSGAGEAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLCKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKDQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=393055 FDZ14_RS06560 WP_047930763.1 1140794..1142035(+) (cinA) [Priestia megaterium strain FDU301]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTGCAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGACTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCGGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGAGGGAAAACACTATATGTTATTCCCCGGGCCTCCAAAAGAGCTTTATCCAATG
TATGAATCGTATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTT
CGGAATAGGGGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATCGCGCCGCTAG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTGATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCCGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTTTAACATCTGTTT
CAGGTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATGCAAAAC
GGATATTGGCATCGGGTTTACAGGTGTAGCTGGACCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGGG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGCCGCCAGGGGATTCGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAGAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M6DMD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.512

99.274

0.591
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47
  cinA Streptococcus mitis SK321

46.19

100

0.47
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465
  cinA Streptococcus pneumoniae R6

45.714

100

0.465
  cinA Streptococcus pneumoniae D39

45.476

100

0.462
  cinA Streptococcus mutans UA159

44.634

99.274

0.443

Multiple sequence alignment