Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GXM_RS15745 Genome accession   NZ_CP045226
Coordinates   3503901..3505427 (+) Length   508 a.a.
NCBI ID   WP_152589409.1    Uniprot ID   -
Organism   Nostoc sphaeroides CCNUC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3498901..3510427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GXM_RS15725 (GXM_03864) - 3499437..3500096 (-) 660 WP_152589407.1 PEP-CTERM sorting domain-containing protein -
  GXM_RS15730 (GXM_03866) - 3500790..3501308 (-) 519 WP_118168139.1 DUF456 domain-containing protein -
  GXM_RS15735 (GXM_03868) - 3502077..3502715 (-) 639 WP_152589408.1 cofactor assembly of complex C subunit B -
  GXM_RS15740 (GXM_03869) rpaB 3503002..3503730 (-) 729 WP_118168137.1 response regulator transcription factor RpaB -
  GXM_RS15745 (GXM_03870) radA 3503901..3505427 (+) 1527 WP_152589409.1 DNA repair protein RadA Machinery gene
  GXM_RS15750 (GXM_03871) - 3505666..3506391 (+) 726 WP_152589410.1 Uma2 family endonuclease -
  GXM_RS15755 (GXM_03872) - 3506717..3506995 (+) 279 WP_152589411.1 hypothetical protein -
  GXM_RS15765 (GXM_03873) - 3507248..3507487 (+) 240 WP_118168133.1 hypothetical protein -
  GXM_RS15770 (GXM_03874) - 3507480..3507608 (+) 129 WP_118168132.1 HNH endonuclease -
  GXM_RS15775 (GXM_03875) - 3508415..3508882 (-) 468 WP_118168131.1 hypothetical protein -
  GXM_RS15780 (GXM_03876) - 3509324..3510178 (+) 855 WP_118168130.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54592.50 Da        Isoelectric Point: 4.8766

>NTDB_id=392839 GXM_RS15745 WP_152589409.1 3503901..3505427(+) (radA) [Nostoc sphaeroides CCNUC1]
MAKPKTFFVCNECGAESPQWFGKCPGCGTYNSLEEQITIQSSVDVPSRGGVSGWQSTQSNGKSHAKPAKARASLTFDQIT
DRQIARWESGYEELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGVSKTL
SVLNEENVKVVVDPTLPIDPDSIGADLYVLPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAAL
MKVAKHEDVTMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVAEGLREVSNPS
ELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGVDYNRLVQILAVLEKRVGIPMSKLDSYVASAG
GLNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPDLNIEILP
VSKVIDAIIAAIPHQELTADDLEPDEDE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=392839 GXM_RS15745 WP_152589409.1 3503901..3505427(+) (radA) [Nostoc sphaeroides CCNUC1]
ATGGCAAAGCCAAAAACCTTTTTTGTGTGTAATGAATGTGGAGCAGAATCGCCCCAGTGGTTTGGTAAATGTCCAGGTTG
CGGCACTTACAACTCTCTAGAAGAACAGATCACTATTCAATCCTCAGTAGATGTACCCAGTCGAGGGGGAGTGAGTGGTT
GGCAATCAACTCAAAGTAATGGCAAATCTCACGCTAAACCAGCTAAAGCGCGAGCCTCCTTAACATTTGACCAAATTACC
GATCGCCAAATTGCCCGATGGGAGTCTGGTTATGAAGAATTGGATCGGGTGCTTGGGGGTGGGGTTGTCCCTGGCTCTAT
GGTACTGATTGGCGGCGATCCGGGTATTGGTAAATCGACTTTATTACTGCAAGTATCTAATCAATTAGCACAGAAATACC
GCATCCTTTACGTAACTGGTGAAGAATCGGGACAGCAGGTAAAATTACGAGCTTCCCGTTTAGGAGTATCAAAAACCCTA
AGTGTGCTTAATGAGGAGAATGTTAAGGTAGTAGTAGATCCTACACTTCCTATAGACCCTGACAGTATAGGTGCAGATTT
ATATGTACTGCCAGAAACAGATTTAGAAGAGATTTTACGGGAAATAGATTCTCTCAAGCCAAACGTGGCGGTGATTGATA
GTATCCAAACAGTATTTTTTCCGGCGTTGACTTCTGCACCCGGTTCAGTAGCTCAGGTACGGGAATGTACGGCAGCATTG
ATGAAGGTGGCGAAGCACGAAGATGTCACTATGCTGATTGTCGGACACGTCACCAAAGAAGGAGCGATCGCCGGGCCAAA
AGTTTTAGAACATTTAGTTGATACAGTGTTGTATTTTGAAGGCGATCGCTTTGCCTCCCATCGGTTATTACGGACAGTAA
AAAACCGTTTTGGTGCAACTCACGAAATCGGCATTTTTGAAATGGTGGCTGAGGGACTACGGGAAGTCTCCAATCCCTCA
GAGCTATTTTTAGGCAACCGTGATGATCCCGCACCCGGTACGGCAATTGTGGTTGCTTGCGAAGGTACTCGCCCCATCGT
TGTAGAGTTGCAAGCTTTGGTGAGTCCCACCAGCTACCCCTCACCCCGGCGGGCTGGAACTGGCGTAGACTACAACCGCC
TAGTGCAAATTCTCGCCGTCTTAGAAAAACGGGTGGGAATTCCCATGTCCAAGTTAGATTCTTACGTTGCTTCTGCGGGT
GGGTTGAATGTAGAAGAACCGGCGGTAGATTTGGGAATTGCGATCGCGATCGTAGCCAGTTTCCGCGATCGCATAGTCGA
TCCCGGTACAGTATTAATCGGTGAAGTTGGCTTAGGCGGACAAGTGCGATCGGTTTCCCAAATGGAACTGCGGTTAAAAG
AAGCTGCTAAGTTGGGATTTAAACGAGCGATCGTGCCAAAAGGAACAAAATTCCCCGACTTGAATATTGAAATATTACCC
GTCTCTAAAGTCATAGATGCAATTATCGCCGCCATCCCGCATCAAGAATTGACAGCCGACGATTTAGAACCCGATGAAGA
TGAGTAA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(89-296)

Subunit ChlI of Mg-chelatase (ChlI)

(402-467)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.304

97.047

0.488
  radA Streptococcus mitis SK321

46.436

96.654

0.449
  radA Streptococcus pneumoniae Rx1

47.974

92.323

0.443
  radA Streptococcus pneumoniae D39

47.974

92.323

0.443
  radA Streptococcus pneumoniae R6

47.974

92.323

0.443
  radA Streptococcus pneumoniae TIGR4

47.974

92.323

0.443
  radA Streptococcus mitis NCTC 12261

47.974

92.323

0.443

Multiple sequence alignment