Detailed information NTG0392801

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: FD951_RS22550
• Genome accession: NZ_CP045221
• Coordinates: 5008504..5009832 (+)
• Length: 442 a.a.
• NCBI ID: WP_023969408.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain ARS 38
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5003504..5014832

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FD951_RS22530 (FD951_22530)	pgeF	5005003..5005728 (-)	726	WP_023969407.1	peptidoglycan editing factor PgeF	-
FD951_RS22535 (FD951_22535)	rluD	5005725..5006687 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
FD951_RS22540 (FD951_22540)	-	5006840..5007862 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
FD951_RS22545 (FD951_22545)	-	5007997..5008230 (+)	234	WP_007924721.1	PP0621 family protein	-
FD951_RS22550 (FD951_22550)	pilR	5008504..5009832 (+)	1329	WP_023969408.1	sigma-54 dependent transcriptional regulator	Regulator
FD951_RS22555 (FD951_22555)	thiO	5009829..5010929 (-)	1101	WP_023969409.1	glycine oxidase ThiO	-
FD951_RS22560 (FD951_22560)	-	5010984..5011385 (-)	402	WP_009050937.1	type IV pilin protein	-
FD951_RS22565 (FD951_22565)	-	5011399..5014467 (-)	3069	WP_023969410.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48821.33 Da
• Isoelectric Point: 9.3860

>NTDB_id=392801 FD951_RS22550 WP_023969408.1 5008504..5009832(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain ARS 38]
MGPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSACARQETAIHALKAGAIDFLSKPVALARLRELLNSALPGSTPPKPVTSPLLGDSTAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELPVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=392801 FD951_RS22550 WP_023969408.1 5008504..5009832(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain ARS 38]
ATGGGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGAAT
GCAGCGCCACACCCGTAGCGCCCGCACCCTGGGCGAAGCCCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCTTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCGCCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCGCCTGCGCCCGCCAGGAAACCGCGATCCACGCCCTGAAAGCCGGTGCCATCGACTTCCTGAGCAAGCCCGT
GGCCCTGGCGCGCTTGCGCGAGCTGCTGAACAGCGCCCTGCCCGGATCGACACCGCCAAAGCCTGTGACCAGTCCTTTGC
TGGGCGATTCGACTGCCATGCACAAACTGCGCGGGCAGATCGGCAAGCTGGCCCGGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGTAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGACCAGGGACCACGGGCCGGACGGGCCTTCGTGCC
GATCAACTGCGGGGCCATTCCACCGGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCATAAGACGCTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGCCGGTGCCACCGCTAAGGGCACGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAA
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAACCT
GTCGTTTCGTTCTATGCGCTACAGGCTGAAGAAGCTCGGTCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	68.397	100	0.686
pilR	Acinetobacter baumannii strain A118	44.662	100	0.464