Detailed information NTG0392800

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FD951_RS22380
• Genome accession: NZ_CP045221
• Coordinates: 4975260..4976132 (+)
• Length: 290 a.a.
• NCBI ID: WP_023969387.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain ARS 38
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4970260..4981132

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FD951_RS22365 (FD951_22365)	-	4972614..4972970 (-)	357	WP_009050906.1	BON domain-containing protein	-
FD951_RS22370 (FD951_22370)	-	4973258..4973674 (-)	417	WP_009050907.1	pilin	-
FD951_RS22375 (FD951_22375)	pilC	4974040..4975257 (+)	1218	WP_023969386.1	type II secretion system F family protein	Machinery gene
FD951_RS22380 (FD951_22380)	pilD	4975260..4976132 (+)	873	WP_023969387.1	A24 family peptidase	Machinery gene
FD951_RS22385 (FD951_22385)	coaE	4976129..4976752 (+)	624	WP_009045669.1	dephospho-CoA kinase	-
FD951_RS22390 (FD951_22390)	yacG	4976749..4976952 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
FD951_RS22395 (FD951_22395)	-	4976957..4977172 (-)	216	WP_009050911.1	hypothetical protein	-
FD951_RS22400 (FD951_22400)	-	4977238..4977927 (-)	690	WP_023969388.1	energy-coupling factor ABC transporter permease	-
FD951_RS22405 (FD951_22405)	-	4977924..4978391 (-)	468	WP_023969389.1	hypothetical protein	-
FD951_RS22410 (FD951_22410)	-	4978846..4980282 (+)	1437	WP_023969390.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32116.30 Da
• Isoelectric Point: 7.9954

>NTDB_id=392800 FD951_RS22380 WP_023969387.1 4975260..4976132(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain ARS 38]
MSLTEVLASYPLVFVASMLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHSIR
PWENIPVFSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAFLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITGSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=392800 FD951_RS22380 WP_023969387.1 4975260..4976132(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain ARS 38]
ATGTCATTGACTGAGGTCCTGGCCAGCTATCCGCTGGTCTTCGTAGCATCGATGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCGAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAGCCTGCCGGGCCGACCTACAACCTGCTGCTCCCGCATTCCCAGTGCCCTCACTGCGCACATTCGATCCGC
CCCTGGGAAAACATCCCGGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCCAGGCACCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCTTCC
TGATGCTGCTGCTGAGCTGGGGCCTGTTGGCAATGAGCCTGATCGATGCCGATCATCAGCTGTTGCCCGACGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCATGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGCTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACAGGA
GCCCTGGCCGGGATCGCCATGCTGCGCCGCAACCGTGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.465	97.931	0.514
pilD	Vibrio campbellii strain DS40M4	52.297	97.586	0.51
pilD	Acinetobacter baumannii D1279779	50.545	94.828	0.479
pilD	Acinetobacter nosocomialis M2	49.818	94.828	0.472
pilD	Neisseria gonorrhoeae MS11	48.162	93.793	0.452