Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   GAY20_RS08310 Genome accession   NZ_CP045216
Coordinates   1776347..1777111 (-) Length   254 a.a.
NCBI ID   WP_152390774.1    Uniprot ID   -
Organism   Pantoea dispersa strain BJQ0007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1771347..1782111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAY20_RS08290 (GAY20_08290) - 1772062..1772664 (-) 603 WP_021509093.1 TetR/AcrR family transcriptional regulator -
  GAY20_RS08295 (GAY20_08295) - 1772794..1773186 (+) 393 WP_058759130.1 RidA family protein -
  GAY20_RS08300 (GAY20_08300) - 1773270..1774736 (-) 1467 WP_152390773.1 aspartate aminotransferase family protein -
  GAY20_RS08305 (GAY20_08305) - 1774749..1776131 (-) 1383 WP_021509096.1 diaminobutyrate--2-oxoglutarate transaminase -
  GAY20_RS08310 (GAY20_08310) pilD 1776347..1777111 (-) 765 WP_152390774.1 A24 family peptidase Machinery gene
  GAY20_RS08315 (GAY20_08315) - 1777959..1778174 (-) 216 WP_227746467.1 hypothetical protein -
  GAY20_RS08320 (GAY20_08320) arnB 1778632..1779768 (+) 1137 WP_152390775.1 UDP-4-amino-4-deoxy-L-arabinose aminotransferase -
  GAY20_RS08325 (GAY20_08325) arnC 1779770..1780756 (+) 987 WP_152390776.1 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28000.94 Da        Isoelectric Point: 8.7309

>NTDB_id=392752 GAY20_RS08310 WP_152390774.1 1776347..1777111(-) (pilD) [Pantoea dispersa strain BJQ0007]
MEIAYWLIGTLLALCVGSFLNVVIYRLPQQVMNPQPGLTLLLPRSHCPHCQTTLRAIDMLPLLSWLLLRGRCRYCHHPVS
LRYPLTELLTAAISLALAWLLPPDSRLPAALLLAWILLALTLIDIEHLLLPDAITLSLLWLGLLFKALHWLPGTLNDAVF
GAIAGYSALWLVGGLYQLIKKRPGLGGGDAKLLAALGAWLGWALLPFVLLLACTGAILFVLLARLGWQRELYHVLPFGPW
LALAGISLFIHTII

Nucleotide


Download         Length: 765 bp        

>NTDB_id=392752 GAY20_RS08310 WP_152390774.1 1776347..1777111(-) (pilD) [Pantoea dispersa strain BJQ0007]
ATGGAAATTGCCTACTGGTTGATCGGTACACTGCTGGCGCTATGTGTCGGTAGCTTTCTCAACGTGGTCATTTATCGCCT
GCCGCAGCAGGTAATGAACCCGCAACCCGGCCTTACCCTGCTGCTGCCGCGCTCGCACTGTCCACACTGCCAGACCACGC
TGCGCGCGATCGATATGCTGCCGCTGCTCAGCTGGCTGTTGTTACGCGGACGCTGTCGCTACTGCCACCACCCGGTGAGC
CTGCGCTACCCGCTGACGGAGCTGCTCACCGCCGCGATCAGCCTGGCGCTGGCCTGGTTGCTGCCGCCCGATAGCCGCCT
GCCTGCCGCCCTGCTGCTCGCCTGGATTCTGCTGGCGCTGACCCTCATCGACATTGAGCATCTGCTGTTGCCGGACGCTA
TCACCCTTTCACTGCTGTGGCTTGGCCTGCTGTTCAAAGCACTGCACTGGCTGCCCGGTACGCTGAATGATGCCGTGTTC
GGCGCGATAGCCGGCTACAGCGCGCTGTGGCTAGTGGGTGGACTCTATCAGCTGATAAAAAAGCGCCCCGGCCTCGGTGG
CGGAGACGCCAAACTGCTGGCTGCGCTGGGTGCCTGGCTCGGCTGGGCGCTTTTACCCTTTGTGCTGTTACTGGCTTGCA
CAGGCGCAATTTTGTTTGTTCTGCTGGCCCGATTAGGCTGGCAACGCGAGCTGTATCACGTGCTGCCCTTTGGTCCGTGG
CTGGCACTGGCGGGCATAAGTCTTTTTATTCACACGATTATTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-99)

Type IV leader peptidase family (Peptidase_A24)

(111-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

46.642

100

0.492
  pilD Acinetobacter baumannii D1279779

41.538

100

0.425
  pilD Acinetobacter nosocomialis M2

41.538

100

0.425
  pilD Vibrio campbellii strain DS40M4

41.797

100

0.421
  pilD Neisseria gonorrhoeae MS11

38.168

100

0.394

Multiple sequence alignment