Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   TMAR_RS11650 Genome accession   NC_014831
Coordinates   2786787..2788184 (-) Length   465 a.a.
NCBI ID   WP_013496696.1    Uniprot ID   E6SLF9
Organism   Thermaerobacter marianensis DSM 12885     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2781787..2793184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TMAR_RS11630 (Tmar_2320) - 2782459..2782854 (+) 396 WP_013496692.1 hypothetical protein -
  TMAR_RS11635 (Tmar_2321) sat 2783075..2784562 (-) 1488 WP_013496693.1 sulfate adenylyltransferase -
  TMAR_RS11640 (Tmar_2322) - 2784719..2785441 (-) 723 WP_013496694.1 phosphoadenylyl-sulfate reductase -
  TMAR_RS11645 (Tmar_2323) disA 2785674..2786741 (-) 1068 WP_013496695.1 DNA integrity scanning diadenylate cyclase DisA -
  TMAR_RS11650 (Tmar_2324) radA 2786787..2788184 (-) 1398 WP_013496696.1 DNA repair protein RadA Machinery gene
  TMAR_RS11655 (Tmar_2325) - 2788284..2790803 (-) 2520 WP_013496697.1 ATP-dependent Clp protease ATP-binding subunit -
  TMAR_RS11660 (Tmar_2326) - 2790824..2791897 (-) 1074 WP_013496698.1 protein arginine kinase -
  TMAR_RS11665 (Tmar_2327) - 2791910..2792461 (-) 552 WP_013496699.1 UvrB/UvrC motif-containing protein -
  TMAR_RS11670 (Tmar_2328) - 2792403..2792948 (-) 546 WP_013496700.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 48179.73 Da        Isoelectric Point: 7.7237

>NTDB_id=39272 TMAR_RS11650 WP_013496696.1 2786787..2788184(-) (radA) [Thermaerobacter marianensis DSM 12885]
MPPRTVFACQACGHVSPKWLGRCPECGAWNTFVEERAAAPAVSGGRRGGPGLAGALAAAREPVEPVALCQVAAGEQPRLE
TGMAELDRVLGGGFVPGSVVLVGGDPGVGKSTLLLQVSQNLAARGLPVLYVTGEESAAQVRLRAERLGALVPGLAVLPTT
DALQAAEAIGRYQPALAVIDSIQTLAHPDVASAPGSVSQVRESAALLLAVAKRLPVVLVLVGHVTRAGTIAGPRVVEHMV
DAVLYFESPAHHAYRLLRAMKNRFGATHEIALFEMQDRGLAEVTNPSARLLSERPRGAAGSAVVAAVEGTRPLLVEIQAL
VAPAPYGQPRRVATGLDLGRAALVLAVLDKRAGLHLGGCDVYLKVAGGLRVDEPALDLGLAVALASSHRDRPADPEAVVI
GELGLAGEVRSVQRVEDRVREAQRLGFRRVILPGGNVTPALAAVAGELELVPVRRVEEAIAAAVG

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=39272 TMAR_RS11650 WP_013496696.1 2786787..2788184(-) (radA) [Thermaerobacter marianensis DSM 12885]
TTGCCCCCACGCACCGTCTTCGCCTGCCAGGCGTGCGGCCACGTCAGCCCCAAGTGGCTGGGCCGCTGCCCGGAGTGCGG
GGCGTGGAATACCTTCGTGGAGGAACGGGCCGCGGCGCCCGCCGTTTCCGGCGGGCGCCGCGGCGGTCCCGGGCTCGCGG
GCGCGCTGGCCGCCGCCCGCGAGCCCGTGGAGCCTGTGGCCCTCTGCCAGGTGGCCGCAGGCGAGCAGCCGCGGCTGGAG
ACGGGCATGGCGGAGCTGGACCGGGTCCTGGGGGGCGGGTTCGTCCCGGGGTCGGTGGTGCTGGTCGGGGGCGACCCCGG
CGTGGGCAAGTCCACCCTGCTCTTGCAGGTGTCCCAGAACCTGGCGGCCCGGGGCCTGCCCGTGCTCTACGTCACCGGCG
AGGAGTCGGCCGCCCAGGTGCGCCTGCGGGCCGAGCGGCTGGGCGCCCTGGTCCCCGGCCTGGCCGTGCTGCCCACCACC
GACGCCCTGCAGGCGGCGGAGGCCATCGGCCGGTACCAGCCCGCCCTGGCCGTCATTGATTCCATTCAGACCCTGGCCCA
CCCCGACGTGGCGTCGGCGCCGGGCAGCGTGAGTCAAGTCCGGGAGAGCGCCGCCCTGCTGCTGGCGGTGGCCAAGCGGC
TGCCGGTGGTGCTGGTCCTGGTGGGGCACGTCACCCGGGCGGGGACCATCGCCGGGCCGCGGGTGGTCGAGCACATGGTG
GACGCCGTGCTCTACTTCGAGTCGCCGGCCCACCACGCCTACCGCCTGCTGCGGGCCATGAAGAACCGCTTCGGCGCCAC
CCACGAGATCGCGCTCTTCGAGATGCAGGACCGGGGCCTGGCCGAGGTGACCAACCCGTCGGCGCGCCTGCTGTCGGAGC
GGCCGCGGGGGGCTGCAGGCTCCGCGGTGGTGGCGGCGGTGGAGGGCACCCGGCCGCTGCTGGTGGAGATCCAGGCCCTG
GTGGCGCCGGCCCCCTACGGCCAGCCCCGCCGCGTGGCCACGGGCCTCGACCTGGGCCGGGCCGCGCTGGTGCTGGCCGT
GCTGGACAAGCGGGCGGGCCTGCACCTGGGGGGCTGCGACGTGTACCTCAAGGTGGCGGGCGGCCTGCGGGTGGATGAGC
CGGCCCTGGACCTGGGGCTGGCCGTCGCCCTGGCTTCCAGCCACCGGGACCGGCCCGCCGATCCCGAGGCCGTGGTGATC
GGCGAGCTGGGCCTGGCGGGTGAGGTGCGCTCGGTGCAACGGGTCGAGGATCGGGTGCGGGAGGCCCAGCGCCTGGGATT
CCGCCGGGTGATCCTGCCCGGGGGCAACGTGACCCCCGCCCTGGCCGCCGTGGCCGGCGAACTGGAGCTGGTGCCGGTCC
GCCGGGTGGAAGAGGCCATCGCCGCGGCGGTGGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-436)

KaiC (ATPase)

(80-149)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E6SLF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.509

99.785

0.514
  radA Streptococcus mitis SK321

49.13

98.925

0.486
  radA Streptococcus pneumoniae D39

49.234

98.28

0.484
  radA Streptococcus pneumoniae TIGR4

49.234

98.28

0.484
  radA Streptococcus pneumoniae R6

49.234

98.28

0.484
  radA Streptococcus pneumoniae Rx1

49.234

98.28

0.484
  radA Streptococcus mitis NCTC 12261

51.034

93.548

0.477

Multiple sequence alignment