Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   GA693_RS10590 Genome accession   NZ_CP045198
Coordinates   2129950..2133819 (-) Length   1289 a.a.
NCBI ID   WP_160240918.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2123350..2148076 2129950..2133819 within 0


Gene organization within MGE regions


Location: 2123350..2148076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA693_RS10550 - 2124601..2125572 (+) 972 WP_160240920.1 triacylglycerol lipase -
  GA693_RS10555 - 2125636..2126612 (+) 977 Protein_1969 esterase/lipase family protein -
  GA693_RS10560 rplS 2126675..2127049 (-) 375 WP_003792460.1 50S ribosomal protein L19 -
  GA693_RS10565 trmD 2127223..2127972 (-) 750 WP_104500704.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GA693_RS10570 rimM 2127999..2128547 (-) 549 WP_016658481.1 ribosome maturation factor RimM -
  GA693_RS10575 rpsP 2128576..2128833 (-) 258 WP_004809941.1 30S ribosomal protein S16 -
  GA693_RS10580 - 2128972..2129424 (-) 453 WP_104472458.1 type IV pilin protein -
  GA693_RS10585 - 2129418..2129945 (-) 528 WP_160240919.1 type IV pilin protein -
  GA693_RS10590 pilY1 2129950..2133819 (-) 3870 WP_160240918.1 PilC/PilY family type IV pilus protein Machinery gene
  GA693_RS10595 - 2133835..2134641 (-) 807 WP_160240917.1 PilX N-terminal domain-containing pilus assembly protein -
  GA693_RS10600 - 2134634..2135596 (-) 963 WP_160240916.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GA693_RS10605 pilV 2135596..2136111 (-) 516 WP_104472464.1 type IV pilus modification protein PilV Machinery gene
  GA693_RS10610 - 2136108..2136659 (-) 552 WP_160240915.1 Tfp pilus assembly protein FimT/FimU -
  GA693_RS10615 ispH 2136823..2137773 (-) 951 WP_045795274.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GA693_RS10620 gmk 2137909..2138532 (+) 624 WP_045795273.1 guanylate kinase -
  GA693_RS10625 rpoZ 2138609..2138890 (+) 282 WP_005013174.1 DNA-directed RNA polymerase subunit omega -
  GA693_RS10630 - 2139113..2141212 (+) 2100 WP_160240914.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  GA693_RS10635 - 2141284..2141667 (+) 384 WP_104513240.1 RidA family protein -
  GA693_RS10640 - 2141822..2142016 (+) 195 WP_034597991.1 bacterioferritin-associated ferredoxin -
  GA693_RS10645 bfr 2142243..2142707 (+) 465 WP_005180468.1 bacterioferritin -
  GA693_RS10650 - 2142816..2144456 (-) 1641 WP_160240913.1 O-antigen ligase -
  GA693_RS10655 - 2144808..2146010 (-) 1203 WP_160240912.1 serine hydrolase -
  GA693_RS10660 - 2146104..2147084 (-) 981 WP_160240911.1 acyltransferase -

Sequence

Protein


Download         Length: 1289 a.a.        Molecular weight: 139638.02 Da        Isoelectric Point: 5.4096

>NTDB_id=392614 GA693_RS10590 WP_160240918.1 2129950..2133819(-) (pilY1) [Acinetobacter indicus strain TQ23]
MQLRKIQISVLSAALTALMCSSVVQASDLQIYAMPTAGQKTIVMMVDVSGSMAWTMGGSTTNNDSLKRITQLKNGIRAVL
DSDDPKLENVVMGLGKFPRASGSKQGVILVPAAKLGAPARNGQPESAQRQALRWAVNNQLAAVGGTPTSHGYAEAASYLM
GTRTNSYIEEQQADVYRENLQRTGNSSNRKYNECTSYSSNISRIGSYYYQECLNFSPITATAFEGKSYDFYTDQSNPRSY
FIKTNIKTLIKVEKNQSNTSGFSNSVLDSKTTTNEIEHYKSPLPTNKVSCDGQGVYVLSDGEPNDSSDAAAQTQMINALS
SPVLNPPDTNFSCNVSSSNLTNPLTGGNSGGAWKCMGEFAKRLYSGANPAGVKIQTAFVGYSNSFNNLSNDDVRNACKLG
SNLKGDACSYYQADGLTLNLNATRRNPESGYGNGGFYTATSANDVTKSVLNFIDNLGTDPLSPLPTGALSVPIDALNPNG
LQNVGYLRMLEPNPAQPSLLTWAGNLKKYTMKDGVLVDRNINIFDAIGNFATNTKNLWGSLLQNDGGLIQVGGTYEMLPM
PTETKQSTLRNLVTDVKDVNGNILVPLETRDETTGTVTPTPLLRVPNLDTGISKNTVLNQFRSQSVLSQFPVSVRLKLLN
YLGFKVDTALEELPENDEVSYEGSPYISMGGIIHSFPVQMTYSGVISSSGELLTQDIPLDDGNFVRARQQSVLYGSMEGG
LHIVDSLTGEEQMVFVPAEILNDERASSALVQKGSGTPAPAHGVDAPWVVDATYRTSGTHPNAQVVATKMNVYGGLRMGG
NSFYALDVLNPKKPKLKFRIGPDLSDFSRMGQSWSKPTLINLRINGKPKRAMVVGGGYDMCYENPRFKLASAATENDTDN
CSTKTRAKGNAIYVVDADTGERLFWASNNDSDADNTHMKHSIVSRVSALDRDGDGFEDHLYFGDLGGQIFRIDLDNYHEK
AGESFGVRTTRLANLATNTDGTSITNGDNPRFYEPVTLTIHDEQGSTSSKTFIVVGAASGDRSTPLDVAPTEGRDGLSPN
IALSGRPVNKVYGIFDLDFINDSLITNRELTTDYTATTSEEDVPLSNRLLTRELTLKDLLSNPQVALTETNTAYSQYFNE
TAPKFGWYRSLSWSWDTTANGAELANGTFRKPGGLKAFEEPLAIGNNLFIPVYDPEGTGITPQDPCLPRVVGETDRQQYC
LPFGVCVTDTGAIDIMREKKTGFRVERDGAGWKNANVIGKGIQGIALANNGGTTGNNSCGNFTLASNTSGIGNWQCTRKL
NPTRWFEKR

Nucleotide


Download         Length: 3870 bp        

>NTDB_id=392614 GA693_RS10590 WP_160240918.1 2129950..2133819(-) (pilY1) [Acinetobacter indicus strain TQ23]
ATGCAACTCAGAAAAATTCAAATATCTGTATTGAGTGCAGCATTGACCGCACTTATGTGTAGTTCAGTTGTACAGGCAAG
CGATTTACAGATTTATGCGATGCCAACAGCAGGTCAAAAAACGATTGTAATGATGGTGGATGTTTCAGGGAGCATGGCCT
GGACCATGGGTGGTAGCACGACTAATAACGATAGTTTAAAGCGTATTACACAATTAAAAAATGGGATCCGTGCAGTATTG
GATAGTGATGATCCAAAACTTGAAAATGTGGTGATGGGTTTAGGTAAGTTTCCTAGAGCAAGCGGTAGTAAGCAGGGAGT
TATTCTTGTTCCTGCTGCAAAACTTGGTGCGCCTGCACGAAATGGACAGCCTGAATCTGCACAGCGCCAAGCTCTTCGTT
GGGCTGTTAATAACCAGCTTGCAGCGGTAGGTGGTACACCAACTTCTCATGGTTATGCAGAAGCTGCATCATATTTAATG
GGGACTAGAACAAATTCTTATATAGAGGAGCAGCAAGCGGATGTGTATAGAGAAAATTTACAACGAACTGGTAATTCATC
TAATAGAAAATATAATGAATGTACTTCTTATAGCTCTAATATAAGTAGAATTGGTTCGTACTATTATCAAGAGTGTTTAA
ATTTTTCGCCAATAACTGCAACAGCATTCGAAGGTAAGAGCTATGATTTTTATACTGACCAAAGTAATCCACGTTCCTAC
TTCATTAAAACAAATATCAAGACACTTATAAAAGTAGAAAAAAATCAGAGTAATACAAGTGGTTTTTCTAACTCAGTTTT
AGATAGCAAAACTACAACTAATGAAATAGAACACTACAAGTCTCCTTTACCAACGAATAAAGTTTCTTGTGATGGTCAAG
GTGTATATGTTTTATCGGATGGGGAACCTAATGACTCTTCTGATGCTGCGGCTCAAACTCAAATGATAAATGCTTTGTCA
TCTCCAGTTCTTAATCCGCCGGATACAAACTTTTCTTGTAATGTGAGTTCTTCAAATTTGACAAATCCATTAACTGGTGG
AAATAGTGGTGGTGCTTGGAAATGTATGGGAGAGTTTGCTAAGCGCTTATATTCAGGAGCTAATCCAGCTGGTGTTAAAA
TTCAAACAGCATTTGTTGGTTATAGTAACAGCTTTAACAATCTCTCTAATGATGATGTAAGAAATGCATGTAAGTTGGGC
TCTAATTTAAAAGGTGATGCTTGTTCATACTATCAAGCCGATGGCTTAACACTCAATCTTAATGCAACTCGGCGTAATCC
TGAAAGTGGTTACGGAAATGGTGGATTTTATACAGCAACTTCGGCAAATGATGTTACCAAAAGTGTATTAAACTTTATTG
ATAATTTGGGAACGGATCCTCTATCTCCTCTACCGACAGGTGCTTTGTCTGTTCCGATTGATGCCTTAAATCCAAATGGA
TTACAAAATGTAGGTTACTTGCGTATGTTAGAGCCTAATCCGGCTCAACCTAGCTTGTTAACTTGGGCGGGAAATCTCAA
GAAATATACAATGAAAGATGGCGTCTTGGTCGATCGTAATATTAATATCTTTGATGCAATTGGTAATTTCGCAACCAATA
CTAAAAATTTGTGGGGTTCATTATTACAGAATGATGGTGGTTTGATTCAAGTTGGTGGGACATATGAAATGTTGCCTATG
CCAACTGAAACTAAGCAATCGACATTACGTAACTTGGTCACAGATGTAAAAGATGTAAATGGTAATATCTTGGTTCCATT
AGAAACTCGAGATGAGACTACAGGAACAGTGACACCTACTCCATTACTTCGAGTGCCGAATTTGGATACAGGAATTTCTA
AAAATACTGTTTTAAATCAATTTAGAAGTCAAAGTGTGCTCTCACAATTTCCAGTATCTGTGCGACTTAAGTTACTTAAC
TATTTAGGATTTAAAGTAGATACAGCGTTAGAAGAATTACCTGAAAATGATGAGGTGAGTTATGAAGGATCTCCATATAT
CAGTATGGGCGGCATTATTCACTCTTTCCCTGTTCAAATGACATATTCAGGCGTGATTTCTAGTTCTGGTGAACTATTAA
CTCAAGATATTCCATTGGATGATGGGAATTTTGTGCGAGCACGTCAGCAATCGGTTTTATATGGATCAATGGAGGGAGGA
TTGCATATCGTTGATTCTCTTACTGGTGAAGAGCAAATGGTATTTGTTCCTGCTGAAATTTTAAATGATGAAAGAGCTTC
TAGTGCTTTAGTTCAAAAAGGATCTGGTACTCCAGCACCAGCACATGGTGTAGATGCACCTTGGGTGGTTGATGCAACTT
ATCGTACTTCAGGAACTCATCCAAATGCGCAAGTTGTGGCGACAAAAATGAACGTATATGGTGGTTTAAGGATGGGAGGG
AACAGTTTCTATGCTCTGGATGTTCTTAATCCTAAAAAACCAAAGTTGAAATTTAGAATTGGTCCAGACTTAAGTGATTT
TAGTCGTATGGGGCAATCTTGGTCCAAACCTACATTAATTAATCTTCGTATAAATGGAAAGCCTAAAAGAGCCATGGTTG
TGGGTGGTGGTTATGATATGTGTTACGAAAATCCAAGATTTAAACTAGCTTCAGCTGCAACTGAAAATGATACAGATAAC
TGTTCTACTAAGACTAGGGCTAAAGGTAACGCGATTTACGTGGTAGATGCCGATACAGGAGAACGCCTATTCTGGGCAAG
TAATAATGATTCAGATGCAGATAATACTCATATGAAGCATAGTATTGTCTCACGTGTCAGTGCTTTGGATCGCGATGGTG
ATGGTTTTGAAGATCATCTGTATTTTGGTGATTTGGGTGGGCAAATTTTTAGGATTGATCTAGATAATTATCATGAAAAA
GCAGGTGAATCTTTTGGTGTACGCACAACAAGACTTGCTAATTTGGCAACAAATACAGATGGAACATCAATTACCAATGG
TGATAACCCACGTTTTTATGAACCAGTGACCTTAACAATTCATGATGAACAAGGTTCTACATCAAGTAAGACATTTATTG
TAGTAGGTGCAGCATCAGGTGATCGTAGTACCCCATTAGATGTTGCTCCAACAGAGGGGCGAGATGGATTGTCACCGAAT
ATTGCACTAAGCGGGCGTCCAGTAAATAAAGTTTACGGAATTTTTGACTTAGATTTTATTAATGACAGCCTGATTACTAA
TAGAGAGTTAACTACTGATTACACTGCAACTACAAGTGAAGAGGATGTACCTTTATCGAACCGTTTGCTTACCCGTGAAT
TAACCCTTAAAGACTTATTATCCAATCCACAGGTAGCATTAACAGAAACCAACACCGCATATAGTCAATATTTTAATGAG
ACTGCACCAAAATTTGGCTGGTACCGTTCGCTTTCTTGGAGTTGGGATACTACAGCTAATGGTGCTGAATTAGCCAATGG
AACATTTAGAAAGCCAGGTGGTCTTAAAGCATTTGAAGAGCCTTTAGCGATTGGAAATAATTTGTTTATTCCAGTTTATG
ATCCTGAAGGTACTGGTATTACACCACAAGACCCATGTTTGCCAAGGGTTGTCGGTGAGACAGATCGACAACAATATTGT
TTACCATTTGGAGTATGTGTCACAGATACAGGCGCTATTGATATAATGCGTGAAAAGAAAACAGGGTTTCGTGTTGAGCG
TGACGGTGCAGGTTGGAAAAATGCAAATGTCATTGGCAAGGGGATTCAAGGTATTGCATTAGCAAACAATGGTGGTACAA
CAGGAAATAATAGTTGTGGAAACTTTACTCTTGCGAGCAATACGAGTGGCATTGGTAATTGGCAATGTACACGTAAATTG
AATCCGACTCGTTGGTTTGAAAAGAGGTAG

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(706-954)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

47.015

100

0.489

Multiple sequence alignment