Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GA693_RS10285 Genome accession   NZ_CP045198
Coordinates   2074583..2075218 (+) Length   211 a.a.
NCBI ID   WP_160232300.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2069583..2080218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA693_RS10275 - 2071702..2072517 (-) 816 WP_104488169.1 NAD(P)H-binding protein -
  GA693_RS10280 recG 2072551..2074596 (+) 2046 WP_160240935.1 ATP-dependent DNA helicase RecG -
  GA693_RS10285 comF 2074583..2075218 (+) 636 WP_160232300.1 ComF family protein Machinery gene
  GA693_RS10290 - 2075241..2075642 (-) 402 WP_171502392.1 NUDIX domain-containing protein -
  GA693_RS10295 - 2075645..2076238 (-) 594 WP_160240933.1 TIGR00730 family Rossman fold protein -
  GA693_RS10300 - 2076391..2077404 (+) 1014 WP_005180320.1 CorA family divalent cation transporter -
  GA693_RS10305 - 2077545..2077832 (-) 288 WP_045795311.1 STAS domain-containing protein -
  GA693_RS10310 - 2077844..2078476 (-) 633 WP_005180322.1 phospholipid-binding protein MlaC -
  GA693_RS10315 - 2078495..2079166 (-) 672 WP_075168244.1 outer membrane lipid asymmetry maintenance protein MlaD -
  GA693_RS10320 mlaE 2079166..2079945 (-) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24394.40 Da        Isoelectric Point: 9.2130

>NTDB_id=392613 GA693_RS10285 WP_160232300.1 2074583..2075218(+) (comF) [Acinetobacter indicus strain TQ23]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QSLLAGSLCELTYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=392613 GA693_RS10285 WP_160232300.1 2074583..2075218(+) (comF) [Acinetobacter indicus strain TQ23]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAACTGCATTAT
CAGTCTTTACTGGCGGGCAGCCTGTGTGAATTGACCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTCGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55

Multiple sequence alignment