Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | D5R78_RS06905 | Genome accession | NZ_CP045187 |
| Coordinates | 1415651..1416625 (+) | Length | 324 a.a. |
| NCBI ID | WP_011275668.1 | Uniprot ID | - |
| Organism | Staphylococcus haemolyticus strain VB19458 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1410651..1421625
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5R78_RS06870 (D5R78_007675) | rpmG | 1411083..1411232 (+) | 150 | WP_011275661.1 | 50S ribosomal protein L33 | - |
| D5R78_RS06875 (D5R78_007670) | - | 1411469..1412005 (+) | 537 | WP_011275662.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| D5R78_RS06880 (D5R78_007665) | - | 1412021..1413478 (+) | 1458 | WP_011275663.1 | rhomboid family protein | - |
| D5R78_RS06885 (D5R78_007660) | - | 1413462..1413665 (+) | 204 | WP_011275664.1 | YqgQ family protein | - |
| D5R78_RS06890 (D5R78_007655) | - | 1413662..1414648 (+) | 987 | WP_011275665.1 | ROK family glucokinase | - |
| D5R78_RS06895 (D5R78_007650) | - | 1414648..1414971 (+) | 324 | WP_011275666.1 | MTH1187 family thiamine-binding protein | - |
| D5R78_RS06900 (D5R78_007645) | - | 1414973..1415599 (+) | 627 | WP_011275667.1 | MBL fold metallo-hydrolase | - |
| D5R78_RS06905 (D5R78_007640) | comGA | 1415651..1416625 (+) | 975 | WP_011275668.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| D5R78_RS06910 (D5R78_007635) | comGB | 1416597..1417661 (+) | 1065 | WP_011275669.1 | competence type IV pilus assembly protein ComGB | - |
| D5R78_RS06915 (D5R78_007630) | comGC | 1417675..1417995 (+) | 321 | WP_011275670.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| D5R78_RS06920 (D5R78_007625) | comGD | 1417976..1418428 (+) | 453 | WP_370444504.1 | competence type IV pilus minor pilin ComGD | - |
| D5R78_RS06925 (D5R78_007620) | - | 1418409..1418708 (+) | 300 | WP_011275672.1 | hypothetical protein | - |
| D5R78_RS13905 (D5R78_007615) | - | 1418626..1419117 (+) | 492 | WP_011275673.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| D5R78_RS06930 (D5R78_007605) | - | 1419277..1419795 (+) | 519 | WP_011275674.1 | shikimate kinase | - |
| D5R78_RS06935 (D5R78_007600) | gcvT | 1419984..1421075 (+) | 1092 | WP_033079984.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37137.14 Da Isoelectric Point: 8.6557
>NTDB_id=392523 D5R78_RS06905 WP_011275668.1 1415651..1416625(+) (comGA) [Staphylococcus haemolyticus strain VB19458]
MKLLFREIVNKAISKNASDIHFIPTVDEVHIKFRINDYLELYEIFNLDVYQKLLVFMKFKSGLDVSSHQSAQSGRYTYQA
KSTFYLRISTLPLSLGIESCVIRIIPQYFQAKKEYKEFNDFKHLVNKKQGLILLTGPTGSGKSTLMYQMVLHAYKELNLN
VITIENPVEQLLKGITQISINKKAGIDYVSSFKAILRCDPDIILIGEIRDAEVAKCVIQASLSGHLVLSTMHSTNCRGAL
LRLLEMGISIQELTQSINIISNQRLITTTQNERRLICETIDKKQIQFFFEHEQTMPHNFNNLQQQLNLLSKEGTICEDTA
SKYF
MKLLFREIVNKAISKNASDIHFIPTVDEVHIKFRINDYLELYEIFNLDVYQKLLVFMKFKSGLDVSSHQSAQSGRYTYQA
KSTFYLRISTLPLSLGIESCVIRIIPQYFQAKKEYKEFNDFKHLVNKKQGLILLTGPTGSGKSTLMYQMVLHAYKELNLN
VITIENPVEQLLKGITQISINKKAGIDYVSSFKAILRCDPDIILIGEIRDAEVAKCVIQASLSGHLVLSTMHSTNCRGAL
LRLLEMGISIQELTQSINIISNQRLITTTQNERRLICETIDKKQIQFFFEHEQTMPHNFNNLQQQLNLLSKEGTICEDTA
SKYF
Nucleotide
Download Length: 975 bp
>NTDB_id=392523 D5R78_RS06905 WP_011275668.1 1415651..1416625(+) (comGA) [Staphylococcus haemolyticus strain VB19458]
TTGAAACTATTATTCAGAGAGATAGTTAATAAAGCTATTTCAAAAAATGCGAGTGACATACATTTTATTCCTACAGTTGA
TGAAGTTCATATTAAATTTAGAATTAATGATTACCTTGAACTTTATGAAATATTCAACTTAGATGTATATCAAAAATTAT
TAGTATTTATGAAGTTCAAATCAGGTTTGGACGTTTCATCTCATCAATCCGCTCAAAGTGGTCGTTATACTTATCAAGCT
AAATCTACTTTTTATTTACGGATTTCAACATTACCTTTGTCTTTAGGTATAGAAAGTTGTGTAATTAGGATAATTCCTCA
ATATTTTCAAGCAAAAAAAGAATATAAAGAATTTAACGATTTTAAACACTTAGTAAATAAAAAACAGGGATTAATTCTAT
TAACTGGACCCACAGGATCCGGAAAAAGCACTCTGATGTATCAAATGGTTCTACATGCATATAAAGAATTAAATCTTAAT
GTCATCACTATCGAAAACCCAGTTGAGCAATTACTAAAGGGAATTACTCAAATATCAATTAATAAAAAAGCAGGTATCGA
CTACGTAAGTTCATTTAAAGCTATATTAAGATGTGATCCTGATATTATTTTAATAGGTGAAATAAGAGACGCAGAAGTTG
CTAAATGTGTAATTCAAGCTAGTTTGAGTGGACATCTTGTATTATCAACTATGCATTCCACTAATTGTAGAGGTGCATTA
CTTCGATTACTTGAGATGGGAATTTCAATTCAAGAATTAACTCAATCGATCAATATCATTTCTAATCAAAGATTAATAAC
GACTACTCAGAATGAGCGTCGCTTAATTTGTGAAACAATAGATAAAAAGCAGATACAATTTTTCTTCGAGCATGAACAAA
CAATGCCACATAATTTTAATAATTTACAACAGCAATTAAATTTATTATCTAAAGAAGGAACAATTTGTGAAGATACTGCA
AGTAAATATTTTTAA
TTGAAACTATTATTCAGAGAGATAGTTAATAAAGCTATTTCAAAAAATGCGAGTGACATACATTTTATTCCTACAGTTGA
TGAAGTTCATATTAAATTTAGAATTAATGATTACCTTGAACTTTATGAAATATTCAACTTAGATGTATATCAAAAATTAT
TAGTATTTATGAAGTTCAAATCAGGTTTGGACGTTTCATCTCATCAATCCGCTCAAAGTGGTCGTTATACTTATCAAGCT
AAATCTACTTTTTATTTACGGATTTCAACATTACCTTTGTCTTTAGGTATAGAAAGTTGTGTAATTAGGATAATTCCTCA
ATATTTTCAAGCAAAAAAAGAATATAAAGAATTTAACGATTTTAAACACTTAGTAAATAAAAAACAGGGATTAATTCTAT
TAACTGGACCCACAGGATCCGGAAAAAGCACTCTGATGTATCAAATGGTTCTACATGCATATAAAGAATTAAATCTTAAT
GTCATCACTATCGAAAACCCAGTTGAGCAATTACTAAAGGGAATTACTCAAATATCAATTAATAAAAAAGCAGGTATCGA
CTACGTAAGTTCATTTAAAGCTATATTAAGATGTGATCCTGATATTATTTTAATAGGTGAAATAAGAGACGCAGAAGTTG
CTAAATGTGTAATTCAAGCTAGTTTGAGTGGACATCTTGTATTATCAACTATGCATTCCACTAATTGTAGAGGTGCATTA
CTTCGATTACTTGAGATGGGAATTTCAATTCAAGAATTAACTCAATCGATCAATATCATTTCTAATCAAAGATTAATAAC
GACTACTCAGAATGAGCGTCGCTTAATTTGTGAAACAATAGATAAAAAGCAGATACAATTTTTCTTCGAGCATGAACAAA
CAATGCCACATAATTTTAATAATTTACAACAGCAATTAAATTTATTATCTAAAGAAGGAACAATTTGTGAAGATACTGCA
AGTAAATATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
65.325 |
99.691 |
0.651 |
| comGA | Staphylococcus aureus N315 |
65.325 |
99.691 |
0.651 |