Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   GB851_RS04915 Genome accession   NZ_CP045141
Coordinates   943982..944788 (+) Length   268 a.a.
NCBI ID   WP_003790494.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 938982..949788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS04895 (GB851_05045) - 940158..941117 (+) 960 WP_003790485.1 calcium/sodium antiporter -
  GB851_RS04900 (GB851_05050) - 941331..942086 (+) 756 WP_164538147.1 IS5 family transposase -
  GB851_RS04905 (GB851_05055) rnc 942137..942862 (-) 726 WP_003790491.1 ribonuclease III -
  GB851_RS04910 (GB851_05060) rluD 942866..943981 (-) 1116 WP_038310838.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GB851_RS04915 (GB851_05065) comL 943982..944788 (+) 807 WP_003790494.1 outer membrane protein assembly factor BamD Machinery gene
  GB851_RS04920 (GB851_05070) folP 944888..945727 (+) 840 WP_003790497.1 dihydropteroate synthase -
  GB851_RS04925 (GB851_05075) lpdA 945810..947603 (+) 1794 WP_164538148.1 dihydrolipoyl dehydrogenase -
  GB851_RS04930 (GB851_05080) - 947682..948356 (+) 675 WP_164538149.1 alpha/beta hydrolase-fold protein -
  GB851_RS04935 (GB851_05085) - 948459..948719 (+) 261 WP_003786945.1 phosphopantetheine-binding protein -
  GB851_RS04940 (GB851_05090) - 948726..948977 (+) 252 WP_026036201.1 acyl carrier protein -
  GB851_RS04945 (GB851_05095) - 948986..949525 (+) 540 WP_003786949.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31140.01 Da        Isoelectric Point: 7.9338

>NTDB_id=392279 GB851_RS04915 WP_003790494.1 943982..944788(+) (comL) [Kingella kingae strain F41215CHC]
MKKFLLVISVAAALSACASNTSTVSKDAQLTQNWSNDQLYSEARQELNDGNYTRATALYELLRARQADGRYTEQSLIESA
YAHFKNEEPAKALQNLARFEQNYPASVDMDYALYLKGLVLFAEDQSFLRRLASQDWSDRDPEANRRAFRVFEQLVNRYPN
SKYAEDARKRMAQLVDALGGHEIAIARYYAKRTAYLAANNRAQRILEQFQNTRYVEEALAIMIYTYEQMGNADMAEAIRR
VLAQNLPNSPYLQQAWKPDEMPWWRWWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=392279 GB851_RS04915 WP_003790494.1 943982..944788(+) (comL) [Kingella kingae strain F41215CHC]
ATGAAAAAATTTCTTCTTGTTATTTCGGTTGCGGCGGCTCTTTCGGCTTGTGCCAGCAACACTTCTACGGTTAGTAAAGA
CGCGCAATTAACGCAAAATTGGTCAAACGACCAGCTATACAGCGAAGCGCGTCAGGAATTAAATGACGGCAATTATACAC
GCGCAACGGCGTTATATGAATTGCTACGCGCACGCCAAGCCGATGGTCGCTATACCGAGCAATCTTTGATTGAATCTGCC
TATGCCCATTTTAAAAACGAAGAACCTGCCAAAGCCTTGCAAAATTTAGCACGCTTTGAGCAAAACTACCCTGCCAGCGT
GGATATGGATTACGCGCTATATTTGAAAGGTTTGGTGTTGTTTGCCGAAGACCAATCGTTCCTACGCCGTTTGGCATCAC
AAGACTGGTCAGACCGCGACCCAGAAGCTAACCGCCGCGCATTCCGCGTATTTGAACAGCTGGTTAATCGCTATCCAAAC
AGCAAATATGCCGAAGATGCGCGTAAACGTATGGCGCAGTTGGTTGATGCTTTGGGTGGGCACGAAATCGCGATTGCGCG
TTACTATGCCAAACGCACGGCATATTTAGCCGCCAACAATCGCGCTCAACGCATTTTGGAGCAATTCCAAAACACGCGCT
ATGTGGAAGAAGCGTTGGCGATTATGATTTATACCTACGAGCAAATGGGCAATGCCGATATGGCAGAAGCCATACGCCGC
GTGTTGGCGCAAAACTTGCCCAACAGCCCATATTTGCAACAGGCGTGGAAACCCGATGAGATGCCTTGGTGGCGTTGGTG
GAAATGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

57.678

99.627

0.575
  comL Neisseria gonorrhoeae MS11

57.303

99.627

0.571

Multiple sequence alignment