Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC/pilC2   Type   Machinery gene
Locus tag   GB851_RS01015 Genome accession   NZ_CP045141
Coordinates   198035..202543 (+) Length   1502 a.a.
NCBI ID   WP_164538028.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 193035..207543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS00995 (GB851_01045) - 193590..194177 (-) 588 WP_003789148.1 FixH family protein -
  GB851_RS01000 (GB851_01050) ccoG 194181..195608 (-) 1428 WP_003787256.1 cytochrome c oxidase accessory protein CcoG -
  GB851_RS01005 (GB851_01055) - 195705..196985 (-) 1281 WP_003789151.1 valine--pyruvate transaminase -
  GB851_RS01010 (GB851_01060) - 197114..197821 (+) 708 WP_003789153.1 SAM-dependent methyltransferase -
  GB851_RS01015 (GB851_01065) pilC/pilC2 198035..202543 (+) 4509 WP_164538028.1 PilC/PilY family type IV pilus protein Machinery gene
  GB851_RS01020 (GB851_01070) mnmG 202849..204735 (+) 1887 WP_019389758.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  GB851_RS01025 (GB851_01075) - 204778..206895 (-) 2118 WP_191070696.1 M3 family metallopeptidase -

Sequence

Protein


Download         Length: 1502 a.a.        Molecular weight: 164149.32 Da        Isoelectric Point: 8.1768

>NTDB_id=392271 GB851_RS01015 WP_164538028.1 198035..202543(+) (pilC/pilC2) [Kingella kingae strain F41215CHC]
MKPASKKRISTQLRQLNKMLWVAFPLLSLPFYAQAENKTLFSDSSLTGIQKTYGPNIALALSVEFPTAGAAYSTATEFTD
AMMSQTFLGYFDNTKCYEYVAPNDRDGMKAFADNGYKQNSGSDNVSKDKYGTPLLAPDGTQALAGKQRSWIFDYDGRRFD
IPDTARRNNMLYESIRQKEFFLYDSHDSIATSGAVNHKYETKEQEYFHPTRTASTSNGMVGVCDGPNEFSGNFMNWATMS
AIDIFRQAMTGGNRALGVAKDTTAYQLGDTPEQTFLRRANVVRAQNANYMQRTVRLSEANIKKVLPHDYAVDKLNPILAD
YGQELSSNKFFLYKGYVPHPYAYRMRLDTRWQWEDETKKTNIKAMTGKVTLATDRPLLVRNSGFGVDFRRSIRDVSGNGW
YHQAFRRDYWSSGRDWRGATWLGDINDGGNGRYWAPVKSRVMPYQVTVEACVPGKLEANCVRQPSGSYKPEGLMQQNAST
MRFAAFGYANIAGNTVSGGVLRSRMRYIANPNRDGAAAAGPAVKYQEEIDPHTGQFYLNPDRNAEGPAQQAFTVNTDKKS
PSPNFDNSGTINYLNKFGDYNNYKTNDPGAELYYTALRYLRHAGFPALYKNKLIEAAGTAGITKEVRDNFPLITDNWDNP
LNVFSDNTTLNVADNVCRPNYIIYIGDTNTHADASLPGGGNTPYDSNVDDDRDIHVRNLIDEKIKPNEPRLSWWNDNWGA
DASPGGAMAALALWGRTHDLQPDFGKRLSSFMIDTVEDGDFKASAGGKNNNYWLAAKYGGFNDLNKNGLPDVGEWETTVN
SNKVDAFEGRASLYKGTPSNYAAANNPTSMVAALNRAFEATAIAEAPSATSLGTTSTKPLSEGGKTMLLQSVFRDATTVV
SGARVKVASGDVLGLEATLKGHKLEYEKKWSAGEKLQAAYHNANGWTNRKVFTRANANSGAVRLQGSNNAVTSVVGGSDA
ADLVNYALGAPTYEDGRKFRIRPNHLMGTVINSPVVTIPSRTGSVSTVAGSCTYPASANISSRPNRHVVAANDGMFYVLD
KEGNEIASYMPSTALPLLKKYASTDYSHFFMNDGIAATSEVCFDTGNGKGDGKAHTVVVGTAGRGGNSVYALDLTDPTTL
EAKDMLWEFTDAGLGKSLFAPIITHDNTGTPVAIVSGGYNADVDTGYIYVLKLNKPVGEQWREDTHPTTPWGSGGNWYRI
KLGAGGVGELFAYQTEARTVAAVYGGDLEGKLWKVSQNAEGRFVAGYADKSTGANLPIFKTAGGTSIVGAPFAQIVGGKT
YVVFITGRYFNKSDLPSTTKTVQNYAYGIIESKIGDNRALKSNGALIDDSTNLLQQSVNEQIVPDSVPQTVFYKVTDNKI
EPKHEGWKLKLQQNWLSIDKSAIRGKRVAEFSAVNPLATDVASAGNMCTENGSTYSLSVNVFNGGVYNKPIYDTNGDGKF
TEADTLVSVAGQAGILTRLTEVSTEFGRIVGGINSMGNMIQMPKDNITSDPVVKRVSWREIF

Nucleotide


Download         Length: 4509 bp        

>NTDB_id=392271 GB851_RS01015 WP_164538028.1 198035..202543(+) (pilC/pilC2) [Kingella kingae strain F41215CHC]
ATGAAGCCAGCAAGCAAAAAGCGCATTTCAACGCAACTGCGCCAGCTCAATAAAATGCTGTGGGTAGCCTTTCCTTTGCT
ATCCTTGCCTTTTTATGCACAAGCAGAAAACAAAACCCTTTTTTCTGATTCATCATTAACAGGTATTCAAAAAACCTACG
GCCCGAATATTGCCTTGGCTTTGTCGGTGGAGTTCCCGACTGCGGGTGCAGCTTATTCAACTGCAACCGAATTTACCGAT
GCTATGATGAGTCAAACCTTTTTGGGCTATTTCGACAACACTAAATGCTATGAATACGTTGCGCCAAATGACCGAGACGG
TATGAAGGCGTTTGCTGATAATGGCTATAAGCAAAATAGTGGCTCAGATAATGTATCCAAGGATAAGTATGGTACACCAT
TGCTTGCGCCCGATGGTACGCAAGCGTTGGCGGGTAAACAGCGCTCATGGATATTCGATTATGATGGACGCAGGTTCGAT
ATTCCGGACACAGCACGCAGAAACAATATGCTTTATGAATCAATACGACAGAAAGAATTCTTCTTGTATGATAGTCATGA
TAGTATAGCTACCAGCGGTGCAGTTAATCATAAATATGAAACGAAAGAGCAAGAATATTTCCATCCAACACGAACCGCCA
GTACAAGCAATGGCATGGTGGGTGTTTGTGATGGTCCAAATGAATTTAGTGGTAACTTCATGAACTGGGCAACCATGTCG
GCGATTGATATTTTCCGTCAAGCGATGACAGGTGGTAACCGTGCGCTGGGTGTTGCAAAAGACACAACAGCTTATCAATT
AGGTGATACGCCCGAGCAAACGTTCTTGCGCCGTGCTAATGTGGTGCGCGCACAAAATGCGAACTATATGCAGCGCACAG
TTCGATTAAGTGAAGCCAATATCAAAAAAGTCTTGCCACACGATTATGCAGTAGATAAACTCAATCCTATTTTGGCAGAC
TATGGTCAAGAATTGTCAAGTAATAAGTTTTTCTTATACAAGGGTTATGTGCCACACCCATACGCATATCGTATGCGGTT
GGATACAAGATGGCAGTGGGAAGATGAAACTAAAAAAACCAACATTAAGGCAATGACAGGTAAAGTTACATTGGCGACTG
ATCGCCCATTGCTTGTACGCAACTCTGGTTTTGGCGTGGATTTCCGCCGTAGTATTCGCGACGTATCAGGTAATGGTTGG
TATCACCAAGCGTTTCGTCGGGATTATTGGAGTTCAGGCCGCGATTGGCGGGGTGCTACTTGGCTTGGTGACATCAACGA
TGGTGGAAATGGTCGCTATTGGGCGCCTGTTAAATCGCGTGTAATGCCTTATCAAGTAACCGTAGAAGCGTGTGTGCCAG
GCAAATTGGAAGCCAACTGCGTGCGTCAGCCATCTGGTTCGTATAAGCCAGAAGGTTTGATGCAACAAAACGCGTCAACC
ATGCGTTTTGCAGCATTTGGTTACGCCAATATTGCAGGTAATACCGTGAGTGGTGGTGTGTTACGTAGCCGTATGCGTTA
TATCGCCAATCCAAATAGAGATGGAGCGGCGGCAGCAGGACCAGCTGTAAAATACCAAGAAGAGATTGACCCTCATACAG
GTCAATTTTATTTGAACCCAGACCGTAACGCCGAAGGTCCAGCGCAGCAAGCGTTTACTGTTAACACAGATAAAAAATCG
CCATCTCCTAATTTTGACAATTCGGGCACGATTAATTATCTGAACAAGTTTGGTGACTACAACAACTATAAAACCAATGA
CCCTGGTGCAGAGTTGTATTACACCGCATTGCGCTATTTGCGTCATGCAGGTTTCCCAGCGTTGTACAAAAACAAATTAA
TCGAAGCGGCTGGTACTGCGGGCATTACAAAAGAGGTTCGCGATAACTTCCCATTGATTACCGACAATTGGGATAACCCA
TTAAACGTGTTCAGCGACAACACTACTTTGAATGTAGCGGATAACGTGTGTCGTCCAAACTATATTATCTATATTGGTGA
TACCAATACCCACGCTGATGCTTCATTGCCTGGCGGTGGGAATACGCCATACGATTCCAATGTGGATGACGACCGAGACA
TTCATGTGCGTAACTTGATTGACGAGAAAATCAAACCAAACGAACCTAGGTTGAGTTGGTGGAATGACAACTGGGGTGCA
GATGCATCACCAGGTGGCGCAATGGCGGCGTTGGCGTTGTGGGGTCGAACCCACGATTTGCAGCCGGATTTTGGTAAGCG
TTTAAGTAGCTTTATGATTGATACGGTTGAGGATGGTGACTTTAAAGCATCGGCAGGAGGTAAGAATAATAACTACTGGT
TAGCAGCCAAATACGGTGGTTTCAATGATTTGAATAAAAATGGTCTTCCAGACGTAGGCGAATGGGAAACGACGGTTAAT
TCAAATAAAGTTGACGCATTTGAGGGCAGGGCTAGCCTTTATAAAGGTACGCCATCAAACTACGCAGCTGCCAACAACCC
AACTTCAATGGTGGCAGCATTGAACCGTGCGTTTGAAGCCACAGCCATAGCCGAAGCACCTTCTGCAACCAGCTTGGGCA
CAACTAGCACCAAACCTTTGTCAGAAGGCGGTAAAACTATGTTGTTGCAATCGGTGTTCCGCGATGCAACCACTGTGGTA
AGTGGTGCGCGTGTTAAAGTGGCATCGGGCGATGTGTTGGGATTGGAAGCAACCTTAAAAGGTCATAAGTTGGAGTACGA
GAAAAAATGGTCGGCTGGCGAAAAATTGCAGGCTGCTTATCACAATGCAAATGGTTGGACAAATCGTAAGGTGTTTACTC
GTGCTAACGCCAATAGCGGTGCAGTTCGTTTGCAAGGTAGCAATAATGCAGTTACGAGCGTTGTAGGTGGCTCAGATGCA
GCAGATTTGGTTAATTACGCTTTGGGTGCACCAACGTATGAAGATGGCAGAAAATTCCGTATTCGTCCAAACCATTTGAT
GGGTACAGTGATTAACTCGCCAGTAGTAACCATTCCATCACGCACAGGCAGCGTTAGCACCGTGGCAGGTAGCTGTACTT
ATCCTGCATCTGCCAATATTAGCTCGCGTCCTAATCGTCATGTGGTAGCAGCCAATGATGGTATGTTCTATGTGTTGGAT
AAAGAAGGTAACGAGATTGCATCGTATATGCCATCAACTGCATTGCCATTGCTGAAAAAATATGCCAGCACCGATTACTC
ACATTTCTTTATGAATGACGGTATCGCCGCTACTTCTGAAGTATGTTTTGACACGGGTAATGGCAAGGGTGATGGCAAGG
CGCATACGGTAGTAGTTGGCACAGCAGGTCGCGGTGGTAACAGCGTGTATGCGTTGGATTTGACTGACCCAACTACTTTG
GAAGCCAAAGATATGCTGTGGGAATTCACAGATGCTGGTTTGGGTAAGAGCTTGTTTGCACCAATTATCACGCATGACAA
TACAGGCACACCTGTGGCGATTGTGAGTGGTGGCTACAATGCCGATGTGGATACAGGTTATATCTATGTTCTAAAATTGA
ACAAACCTGTTGGCGAACAATGGCGCGAAGATACGCACCCAACCACGCCTTGGGGTAGTGGCGGTAACTGGTATCGCATT
AAACTGGGTGCTGGTGGCGTAGGCGAATTGTTTGCTTACCAAACCGAAGCACGCACCGTTGCAGCTGTGTATGGTGGCGA
TTTAGAAGGCAAGCTGTGGAAGGTATCGCAAAATGCCGAAGGTCGCTTTGTAGCGGGTTATGCAGATAAATCGACAGGCG
CAAACTTGCCTATCTTCAAAACTGCAGGTGGTACATCTATCGTAGGTGCGCCTTTTGCACAAATCGTAGGTGGTAAAACG
TATGTTGTGTTTATTACTGGTCGCTACTTCAACAAGAGCGATTTGCCTAGCACAACCAAAACAGTACAAAACTACGCATA
CGGCATTATCGAGAGCAAAATCGGCGATAACCGCGCACTTAAATCTAACGGTGCGTTGATTGACGATAGCACTAACTTGT
TGCAACAAAGCGTGAATGAGCAAATCGTTCCAGACAGCGTGCCACAAACTGTGTTCTACAAAGTTACCGATAACAAAATC
GAGCCGAAACACGAAGGCTGGAAGCTGAAACTGCAACAAAACTGGTTGAGTATCGATAAGAGTGCGATTCGCGGCAAACG
TGTTGCAGAATTTAGCGCAGTGAATCCGTTGGCGACCGATGTGGCTAGTGCTGGTAATATGTGTACCGAAAACGGTTCGA
CTTATTCGTTGTCAGTTAATGTGTTCAATGGTGGTGTGTACAACAAACCTATCTATGACACAAACGGCGATGGTAAGTTT
ACCGAAGCGGATACTTTGGTATCTGTGGCTGGTCAGGCTGGTATTTTGACTCGCTTAACCGAAGTTTCTACCGAGTTCGG
TCGTATTGTTGGCGGTATCAACAGTATGGGTAACATGATTCAAATGCCAAAAGACAATATCACCAGCGACCCTGTGGTGA
AACGTGTATCTTGGCGCGAGATTTTCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(987-1341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC/pilC2 Kingella kingae strain KK03

86.812

100

0.872

Multiple sequence alignment