Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GA636_RS05095 Genome accession   NZ_CP045135
Coordinates   1047393..1048028 (-) Length   211 a.a.
NCBI ID   WP_160232300.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1042393..1053028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA636_RS05060 mlaE 1042667..1043446 (+) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  GA636_RS05065 - 1043446..1044117 (+) 672 WP_016658517.1 outer membrane lipid asymmetry maintenance protein MlaD -
  GA636_RS05070 - 1044136..1044768 (+) 633 WP_005180322.1 phospholipid-binding protein MlaC -
  GA636_RS05075 - 1044780..1045067 (+) 288 WP_160232298.1 STAS domain-containing protein -
  GA636_RS05080 - 1045207..1046220 (-) 1014 WP_005180320.1 CorA family divalent cation transporter -
  GA636_RS05085 - 1046373..1046966 (+) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  GA636_RS05090 - 1046969..1047370 (+) 402 WP_168399737.1 NUDIX hydrolase -
  GA636_RS05095 comF 1047393..1048028 (-) 636 WP_160232300.1 ComF family protein Machinery gene
  GA636_RS05100 recG 1048015..1050060 (-) 2046 WP_016658521.1 ATP-dependent DNA helicase RecG -
  GA636_RS05105 - 1050094..1050909 (+) 816 WP_160232301.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24394.40 Da        Isoelectric Point: 9.2130

>NTDB_id=392220 GA636_RS05095 WP_160232300.1 1047393..1048028(-) (comF) [Acinetobacter indicus strain XG01]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QSLLAGSLCELTYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=392220 GA636_RS05095 WP_160232300.1 1047393..1048028(-) (comF) [Acinetobacter indicus strain XG01]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAACTGCATTAT
CAGTCTTTACTGGCGGGCAGCCTGTGTGAATTGACCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
ACGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTACGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTTGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55

Multiple sequence alignment