Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   GA636_RS00265 Genome accession   NZ_CP045135
Coordinates   54893..55690 (-) Length   265 a.a.
NCBI ID   WP_216071642.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 49893..60690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA636_RS00245 - 50936..51640 (-) 705 WP_005182401.1 YfgM family protein -
  GA636_RS00250 hisS 51671..52966 (-) 1296 WP_160232074.1 histidine--tRNA ligase -
  GA636_RS00255 ispG 52970..54091 (-) 1122 WP_160232075.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  GA636_RS00260 - 54114..54902 (-) 789 WP_045795990.1 helix-turn-helix domain-containing protein -
  GA636_RS00265 pilF 54893..55690 (-) 798 WP_216071642.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  GA636_RS00270 rlmN 55726..56961 (-) 1236 WP_005182389.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  GA636_RS00275 ndk 57084..57515 (-) 432 WP_005182388.1 nucleoside-diphosphate kinase -
  GA636_RS00280 iscX 57624..57824 (-) 201 WP_005182385.1 Fe-S cluster assembly protein IscX -
  GA636_RS00285 - 57919..58472 (-) 554 Protein_51 phosphatase PAP2 family protein -
  GA636_RS00290 - 58505..59788 (-) 1284 WP_104484270.1 glycosyltransferase family 4 protein -
  GA636_RS00295 - 59956..60375 (-) 420 WP_005182377.1 hypothetical protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29974.90 Da        Isoelectric Point: 8.3587

>NTDB_id=392198 GA636_RS00265 WP_216071642.1 54893..55690(-) (pilF) [Acinetobacter indicus strain XG01]
MYKFTTISTLCVAAWMSTGCQTTTPTLSPKDPEKAIQVRTQLAAEYLKSGDLDSAKRALDQALETDSRDSMANMMMGVLL
QQEGSKLNLEKADTYFKRAISADPNNAQARNNYGTYLYQVERYNDAIEQLSIAGATLGYDQRFRALENVGRIYLKLGDMV
NAEKSFKQALQANRDSYVSMLELAEIFYFNQQTPAASRMYEQFVRAVGQKNQGARALWIGIRVARANGDQLGQQVLVNQL
RALFPESQEYQRYLQLQHSTEAVWK

Nucleotide


Download         Length: 798 bp        

>NTDB_id=392198 GA636_RS00265 WP_216071642.1 54893..55690(-) (pilF) [Acinetobacter indicus strain XG01]
ATGTATAAATTCACAACTATCAGCACACTGTGTGTAGCTGCATGGATGAGCACCGGCTGTCAAACCACAACTCCTACTTT
AAGTCCGAAAGATCCGGAAAAGGCAATTCAGGTGCGTACCCAGCTGGCGGCCGAGTATTTAAAATCGGGTGATTTAGACT
CGGCCAAACGTGCCCTGGATCAGGCACTGGAAACAGATTCGCGTGATTCCATGGCCAATATGATGATGGGCGTGCTGCTA
CAGCAAGAAGGCAGCAAGCTGAATCTGGAGAAGGCCGATACGTATTTTAAGCGTGCCATCTCTGCTGATCCGAACAATGC
GCAGGCGCGTAACAACTATGGTACGTATTTGTATCAGGTTGAACGCTATAATGATGCCATTGAACAGCTGAGTATTGCCG
GGGCAACACTCGGTTATGATCAACGTTTTCGTGCATTGGAAAACGTGGGGCGAATTTACCTGAAACTGGGCGATATGGTG
AATGCTGAAAAATCATTCAAGCAGGCCCTGCAGGCAAACCGTGACTCCTATGTTTCAATGTTAGAGTTGGCGGAAATTTT
TTATTTCAACCAGCAGACTCCTGCAGCATCCAGAATGTATGAACAGTTTGTACGTGCTGTAGGACAAAAAAATCAAGGTG
CGCGTGCATTATGGATTGGGATCCGTGTTGCACGTGCAAATGGCGATCAGTTGGGACAGCAGGTGCTGGTCAATCAGCTT
CGGGCATTGTTCCCTGAAAGCCAGGAATATCAACGTTATTTGCAATTACAGCACAGTACTGAGGCCGTATGGAAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(42-76)

Tetratricopeptide repeat (TPR_17)

(96-128)

Tetratricopeptide repeat (TPR_8)

(144-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

77.606

97.736

0.758
  pilF Acinetobacter baylyi ADP1

71.747

100

0.728

Multiple sequence alignment