Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   GA721_RS07705 Genome accession   NZ_CP045131
Coordinates   1635419..1635763 (-) Length   114 a.a.
NCBI ID   WP_035363078.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ18     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1630419..1640763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA721_RS07675 tadA 1630662..1631183 (-) 522 WP_104488986.1 tRNA adenosine(34) deaminase TadA -
  GA721_RS07680 - 1631187..1632311 (-) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  GA721_RS07685 ung 1632308..1633021 (-) 714 WP_005177514.1 uracil-DNA glycosylase -
  GA721_RS07690 - 1633063..1633659 (-) 597 WP_005177512.1 6-pyruvoyl trahydropterin synthase family protein -
  GA721_RS07695 gspK 1633807..1634754 (-) 948 WP_160243266.1 type II secretion system minor pseudopilin GspK -
  GA721_RS07700 xcpW 1634787..1635422 (-) 636 WP_160243268.1 type II secretion system minor pseudopilin GspJ Machinery gene
  GA721_RS07705 xcpV 1635419..1635763 (-) 345 WP_035363078.1 type II secretion system protein Machinery gene
  GA721_RS07710 - 1635906..1636478 (-) 573 WP_160243270.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GA721_RS07715 - 1636484..1637098 (-) 615 WP_160243272.1 TetR/AcrR family transcriptional regulator -
  GA721_RS07720 - 1637159..1637932 (-) 774 WP_005177502.1 TatD family hydrolase -
  GA721_RS07725 - 1637962..1638303 (-) 342 WP_160243274.1 PilZ domain-containing protein -
  GA721_RS07730 - 1638315..1639298 (-) 984 WP_005177500.1 DNA polymerase III, delta' subunit -
  GA721_RS07735 kdsB 1639307..1640071 (-) 765 WP_104472237.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12588.33 Da        Isoelectric Point: 6.2041

>NTDB_id=392176 GA721_RS07705 WP_035363078.1 1635419..1635763(-) (xcpV) [Acinetobacter indicus strain TQ18]
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPN
VQRVEVQVSLFNLDTGQVEAGITHLVFFNHRAAQ

Nucleotide


Download         Length: 345 bp        

>NTDB_id=392176 GA721_RS07705 WP_035363078.1 1635419..1635763(-) (xcpV) [Acinetobacter indicus strain TQ18]
ATGGTGGCACTGGCGATTTTCGCTACAGCTGCCATGGCGCTGACTCAAGTGGCCATGCAATATACCCAGTCGACCTCTCA
TGCCATTTTAAGAACCAAAGCGCAGTTTGTGGCCTTAAACGAACAGGCATTAATGGAAATCCAGCAGGACTGGCTCACGG
GTACGCAATCAAAACAGGTCACCCTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCCACCATTAGCCCGAAT
GTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCTCGATACCGGTCAGGTTGAAGCCGGCATCACCCATTTGGTGTT
TTTTAATCATCGGGCGGCGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

76.364

96.491

0.737

Multiple sequence alignment