Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HO402_RS11530 Genome accession   NZ_CP053594
Coordinates   2454530..2455957 (-) Length   475 a.a.
NCBI ID   WP_000980563.1    Uniprot ID   -
Organism   Escherichia coli strain T7Express_Crystal     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2449530..2460957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO402_RS11500 (HO402_11505) yeeZ 2449585..2450409 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HO402_RS11505 (HO402_11510) yeeY 2450455..2451384 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  HO402_RS11510 (HO402_11515) yoeI 2451599..2451661 (+) 63 WP_010723108.1 membrane protein YoeI -
  HO402_RS11515 (HO402_11520) plaP 2451651..2453009 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HO402_RS11520 (HO402_11525) tsuA 2453188..2454246 (+) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  HO402_RS11525 (HO402_11530) tsuB 2454260..2454487 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HO402_RS11530 (HO402_11535) sbcB 2454530..2455957 (-) 1428 WP_000980563.1 exodeoxyribonuclease I Machinery gene
  HO402_RS11535 (HO402_11540) dacD 2456166..2457332 (+) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HO402_RS11540 (HO402_11545) sbmC 2457451..2457924 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  HO402_RS11545 (HO402_11550) yeeA 2458122..2459180 (+) 1059 WP_001200905.1 FUSC family protein -
  HO402_RS11550 (HO402_11555) tmaR 2459352..2459681 (+) 330 WP_000450409.1 DUF496 family protein -
  HO402_RS11555 (HO402_11560) - 2459782..2459964 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HO402_RS11560 (HO402_11565) - 2460018..2460164 (+) 147 Protein_2266 transposase domain-containing protein -
  HO402_RS11565 (HO402_11570) - 2460453..2460533 (-) 81 Protein_2267 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6054

>NTDB_id=392170 HO402_RS11530 WP_000980563.1 2454530..2455957(-) (sbcB) [Escherichia coli strain T7Express_Crystal]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=392170 HO402_RS11530 WP_000980563.1 2454530..2455957(-) (sbcB) [Escherichia coli strain T7Express_Crystal]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment