Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | GA721_RS01730 | Genome accession | NZ_CP045131 |
| Coordinates | 367023..367658 (-) | Length | 211 a.a. |
| NCBI ID | WP_160242779.1 | Uniprot ID | - |
| Organism | Acinetobacter indicus strain TQ18 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 362023..372658
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GA721_RS01695 | mlaE | 362296..363075 (+) | 780 | WP_005180328.1 | lipid asymmetry maintenance ABC transporter permease subunit MlaE | - |
| GA721_RS01700 | - | 363075..363746 (+) | 672 | WP_075168244.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| GA721_RS01705 | - | 363765..364397 (+) | 633 | WP_005180322.1 | phospholipid-binding protein MlaC | - |
| GA721_RS01710 | - | 364409..364696 (+) | 288 | WP_127799307.1 | STAS domain-containing protein | - |
| GA721_RS01715 | - | 364837..365850 (-) | 1014 | WP_005180320.1 | CorA family divalent cation transporter | - |
| GA721_RS01720 | - | 366003..366596 (+) | 594 | WP_005180318.1 | TIGR00730 family Rossman fold protein | - |
| GA721_RS01725 | - | 366599..367000 (+) | 402 | WP_171503172.1 | NUDIX hydrolase | - |
| GA721_RS01730 | comF | 367023..367658 (-) | 636 | WP_160242779.1 | ComF family protein | Machinery gene |
| GA721_RS01735 | recG | 367645..369690 (-) | 2046 | WP_160242780.1 | ATP-dependent DNA helicase RecG | - |
| GA721_RS01740 | - | 369724..370539 (+) | 816 | WP_160242781.1 | NAD(P)H-binding protein | - |
Sequence
Protein
Download Length: 211 a.a. Molecular weight: 24388.39 Da Isoelectric Point: 9.2130
>NTDB_id=392163 GA721_RS01730 WP_160242779.1 367023..367658(-) (comF) [Acinetobacter indicus strain TQ18]
MPMFKLPAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QPLLAGSLCELAYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDTGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG
MPMFKLPAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QPLLAGSLCELAYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDTGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG
Nucleotide
Download Length: 636 bp
>NTDB_id=392163 GA721_RS01730 WP_160242779.1 367023..367658(-) (comF) [Acinetobacter indicus strain TQ18]
ATGCCTATGTTTAAGCTGCCGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAATTGCATTAT
CAGCCTTTACTGGCGGGCAGCCTGTGTGAATTGGCCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGTTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGGCTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTACGGCCCGATACCGGCCGGCCCTATCGCCGGGTGTTAATTGTCGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCGCTAAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA
ATGCCTATGTTTAAGCTGCCGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAATTGCATTAT
CAGCCTTTACTGGCGGGCAGCCTGTGTGAATTGGCCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGTTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGGCTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTACGGCCCGATACCGGCCGGCCCTATCGCCGGGTGTTAATTGTCGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCGCTAAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baumannii D1279779 |
55.024 |
99.052 |
0.545 |
| comF | Acinetobacter baumannii strain A118 |
55.024 |
99.052 |
0.545 |