Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | GA660_RS02110 | Genome accession | NZ_CP045129 |
| Coordinates | 438328..438963 (-) | Length | 211 a.a. |
| NCBI ID | WP_160232300.1 | Uniprot ID | - |
| Organism | Acinetobacter indicus strain TQ04 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 433328..443963
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GA660_RS02075 | mlaE | 433601..434380 (+) | 780 | WP_005180328.1 | lipid asymmetry maintenance ABC transporter permease subunit MlaE | - |
| GA660_RS02080 | - | 434380..435051 (+) | 672 | WP_075168244.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| GA660_RS02085 | - | 435070..435702 (+) | 633 | WP_005180322.1 | phospholipid-binding protein MlaC | - |
| GA660_RS02090 | - | 435714..436001 (+) | 288 | WP_045795311.1 | STAS domain-containing protein | - |
| GA660_RS02095 | - | 436142..437155 (-) | 1014 | WP_005180320.1 | CorA family divalent cation transporter | - |
| GA660_RS02100 | - | 437308..437901 (+) | 594 | WP_160240933.1 | TIGR00730 family Rossman fold protein | - |
| GA660_RS02105 | - | 437904..438305 (+) | 402 | WP_171502392.1 | NUDIX hydrolase | - |
| GA660_RS02110 | comF | 438328..438963 (-) | 636 | WP_160232300.1 | ComF family protein | Machinery gene |
| GA660_RS02115 | recG | 438950..440995 (-) | 2046 | WP_160240935.1 | ATP-dependent DNA helicase RecG | - |
| GA660_RS02120 | - | 441029..441844 (+) | 816 | WP_104488169.1 | NAD(P)H-binding protein | - |
Sequence
Protein
Download Length: 211 a.a. Molecular weight: 24394.40 Da Isoelectric Point: 9.2130
>NTDB_id=392122 GA660_RS02110 WP_160232300.1 438328..438963(-) (comF) [Acinetobacter indicus strain TQ04]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QSLLAGSLCELTYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QSLLAGSLCELTYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG
Nucleotide
Download Length: 636 bp
>NTDB_id=392122 GA660_RS02110 WP_160232300.1 438328..438963(-) (comF) [Acinetobacter indicus strain TQ04]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAACTGCATTAT
CAGTCTTTACTGGCGGGCAGCCTGTGTGAATTGACCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTCGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAACTGCATTAT
CAGTCTTTACTGGCGGGCAGCCTGTGTGAATTGACCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTCGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baumannii D1279779 |
55.502 |
99.052 |
0.55 |
| comF | Acinetobacter baumannii strain A118 |
55.502 |
99.052 |
0.55 |