Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GA646_RS02525 Genome accession   NZ_CP045127
Coordinates   353712..354347 (-) Length   211 a.a.
NCBI ID   WP_160255443.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348712..359347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA646_RS02490 mlaE 349011..349790 (+) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  GA646_RS02495 - 349790..350461 (+) 672 WP_075168244.1 outer membrane lipid asymmetry maintenance protein MlaD -
  GA646_RS02500 - 350480..351112 (+) 633 WP_005180322.1 phospholipid-binding protein MlaC -
  GA646_RS02505 - 351124..351411 (+) 288 WP_005180321.1 STAS domain-containing protein -
  GA646_RS02510 - 351526..352539 (-) 1014 WP_005180320.1 CorA family divalent cation transporter -
  GA646_RS02515 - 352692..353285 (+) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  GA646_RS02520 - 353288..353689 (+) 402 WP_104489521.1 NUDIX hydrolase -
  GA646_RS02525 comF 353712..354347 (-) 636 WP_160255443.1 ComF family protein Machinery gene
  GA646_RS02530 recG 354334..356379 (-) 2046 WP_104503640.1 ATP-dependent DNA helicase RecG -
  GA646_RS02535 - 356413..357228 (+) 816 WP_160255444.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24420.50 Da        Isoelectric Point: 9.0648

>NTDB_id=392081 GA646_RS02525 WP_160255443.1 353712..354347(-) (comF) [Acinetobacter indicus strain XG03]
MPMFKLLAHSRTLLQKLLPCQLCGCAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QPLLAGSLCELAYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDTGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=392081 GA646_RS02525 WP_160255443.1 353712..354347(-) (comF) [Acinetobacter indicus strain XG03]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCTGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAATTGCATTAT
CAGCCTTTACTGGCGGGCAGCCTGTGTGAATTGGCCTATCCACGGGTACAGGCCATTGTCCCGATGCCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGTTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGGCTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTACGGCCCGATACCGGCCGGCCCTATCGCCGGGTGTTAATTGTCGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55

Multiple sequence alignment