Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GA645_RS02085 Genome accession   NZ_CP045118
Coordinates   437368..437775 (+) Length   135 a.a.
NCBI ID   WP_015475142.1    Uniprot ID   A0AA42HJ21
Organism   Pseudomonas sp. SCB32     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 432368..442775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA645_RS02060 pyrR 433477..433989 (-) 513 WP_152219510.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  GA645_RS02065 ruvX 434108..434545 (-) 438 WP_152227853.1 Holliday junction resolvase RuvX -
  GA645_RS02070 - 434542..435111 (-) 570 WP_152227855.1 YqgE/AlgH family protein -
  GA645_RS02075 - 435188..436081 (-) 894 WP_152219512.1 energy transducer TonB -
  GA645_RS02080 gshB 436136..437098 (-) 963 WP_152219514.1 glutathione synthase -
  GA645_RS02085 pilG 437368..437775 (+) 408 WP_015475142.1 twitching motility response regulator PilG Regulator
  GA645_RS02090 pilH 437822..438187 (+) 366 WP_009615257.1 twitching motility response regulator PilH -
  GA645_RS02095 - 438249..438785 (+) 537 WP_152219516.1 chemotaxis protein CheW -
  GA645_RS02100 - 438867..440915 (+) 2049 WP_152219517.1 methyl-accepting chemotaxis protein -
  GA645_RS02105 - 440975..441838 (+) 864 WP_152219520.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14810.17 Da        Isoelectric Point: 6.8621

>NTDB_id=392022 GA645_RS02085 WP_015475142.1 437368..437775(+) (pilG) [Pseudomonas sp. SCB32]
MEQHSDGLKVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPSIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKTHVPDFTPVEHAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=392022 GA645_RS02085 WP_015475142.1 437368..437775(+) (pilG) [Pseudomonas sp. SCB32]
ATGGAACAGCATTCCGACGGTTTGAAAGTAATGGTGATCGACGACTCCAAGACGATTCGTCGCACCGCCGAAACCCTGCT
GAAGAAAGTCGGCTGCGATGTCATCACGGCCATCGACGGTTTCGATGCTCTGGCCAAGATTGCCGATACCCATCCCAGCA
TCATCTTCGTCGACATCATGATGCCCCGCCTGGATGGCTATCAGACCTGCGCCCTGATCAAGAACAACAGTGCCTTCAAA
TCCACCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGTTCCGACCAGTA
CCTCACCAAGCCCTTCAGCAAGGAAGAGCTGCTCGGCGCGATCAAGACCCATGTGCCTGACTTTACCCCGGTGGAGCACG
CTTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

92.593

0.696
  vicR Streptococcus mutans UA159

42.063

93.333

0.393

Multiple sequence alignment