Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GBN93_RS16045 Genome accession   NZ_CP045103
Coordinates   3331729..3332376 (+) Length   215 a.a.
NCBI ID   WP_234964893.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3326729..3337376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN93_RS16025 (GBN93_16080) - 3327861..3328238 (-) 378 WP_029575123.1 hypothetical protein -
  GBN93_RS16030 (GBN93_16085) - 3328423..3328656 (-) 234 WP_234966548.1 DUF6500 family protein -
  GBN93_RS16035 (GBN93_16090) - 3328857..3329663 (-) 807 WP_234964891.1 NAD-dependent epimerase/dehydratase family protein -
  GBN93_RS16040 (GBN93_16095) recG 3329697..3331742 (+) 2046 WP_234964892.1 ATP-dependent DNA helicase RecG -
  GBN93_RS16045 (GBN93_16100) comF 3331729..3332376 (+) 648 WP_234964893.1 ComF family protein Machinery gene
  GBN93_RS16050 (GBN93_16105) - 3332377..3332781 (-) 405 WP_205667562.1 NUDIX hydrolase -
  GBN93_RS16055 (GBN93_16110) - 3332778..3333377 (-) 600 WP_205667561.1 TIGR00730 family Rossman fold protein -
  GBN93_RS16060 (GBN93_16115) - 3333530..3334543 (+) 1014 WP_004691361.1 CorA family divalent cation transporter -
  GBN93_RS16065 (GBN93_16120) - 3334627..3334914 (-) 288 WP_004691363.1 lipid asymmetry maintenance protein MlaB -
  GBN93_RS16070 (GBN93_16125) - 3334926..3335561 (-) 636 WP_234964894.1 phospholipid-binding protein MlaC -
  GBN93_RS16075 (GBN93_16130) - 3335582..3336256 (-) 675 WP_234964895.1 outer membrane lipid asymmetry maintenance protein MlaD -
  GBN93_RS16080 (GBN93_16135) mlaE 3336256..3337035 (-) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24923.17 Da        Isoelectric Point: 9.3797

>NTDB_id=391964 GBN93_RS16045 WP_234964893.1 3331729..3332376(+) (comF) [Acinetobacter johnsonii strain AJ413]
MPMFSHFLHTAKQLLHKAQPCQLCSIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGQYQYPLDHLIQQFKYEQQLY
WQPLLSGILQQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYAKLYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=391964 GBN93_RS16045 WP_234964893.1 3331729..3332376(+) (comF) [Acinetobacter johnsonii strain AJ413]
ATGCCTATGTTTAGTCATTTCCTGCACACCGCCAAACAGTTGCTGCACAAAGCACAGCCTTGTCAGTTGTGTAGCATTGT
ACGCGCAGATCTGCATTCGGTCTGTCTGGACTGCTGGCAACAACTCCCACTGCATCCACAAACCATTGAAAAACAAGAGC
TGAGTATTCATGTCGCAGGGCAGTATCAATATCCTTTAGATCATCTTATTCAGCAGTTTAAATATGAACAACAACTGTAT
TGGCAACCTCTACTGTCAGGCATTCTTCAGCAAATTCGCTTACCTAAAGTACAAGCAATTGTTCCGATGCCGATTTCGAC
TCAGCGTTTAGCGGAACGTGGCTACAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTAAATGTGCCCATTT
GGCAACCTGTGATACGACTGCATCAACATTCACAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTATGCAAAACTCTACCGGCGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCCCTGACTTTACAGCTAGAACAATTGGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

57.732

90.233

0.521
  comF Acinetobacter baumannii D1279779

57.732

90.233

0.521

Multiple sequence alignment