Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   GBN93_RS04485 Genome accession   NZ_CP045103
Coordinates   967662..972161 (+) Length   1499 a.a.
NCBI ID   WP_234965501.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ413     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 962662..977161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN93_RS04460 (GBN93_04470) - 963134..963772 (-) 639 WP_234965499.1 hypothetical protein -
  GBN93_RS04465 (GBN93_04475) pilG 964053..964436 (+) 384 WP_004694493.1 twitching motility response regulator PilG Regulator
  GBN93_RS04470 (GBN93_04480) - 964464..964832 (+) 369 WP_004694491.1 response regulator -
  GBN93_RS04475 (GBN93_04485) - 964838..965374 (+) 537 WP_004694490.1 chemotaxis protein CheW -
  GBN93_RS04480 (GBN93_04490) - 965425..967497 (+) 2073 WP_234965500.1 methyl-accepting chemotaxis protein -
  GBN93_RS04485 (GBN93_04495) chpA 967662..972161 (+) 4500 WP_234965501.1 Hpt domain-containing protein Regulator
  GBN93_RS04490 (GBN93_04500) - 972166..972621 (+) 456 WP_114837795.1 hypothetical protein -
  GBN93_RS04495 (GBN93_04505) dapE 972687..973820 (-) 1134 WP_234965502.1 succinyl-diaminopimelate desuccinylase -
  GBN93_RS04500 (GBN93_04510) - 973941..974081 (-) 141 WP_087010462.1 entericidin A/B family lipoprotein -
  GBN93_RS04505 (GBN93_04515) - 974239..975117 (-) 879 WP_234965503.1 DUF1853 family protein -
  GBN93_RS04510 (GBN93_04520) - 975215..975607 (+) 393 WP_234965504.1 YbaN family protein -
  GBN93_RS04515 (GBN93_04525) elsL 975607..976110 (+) 504 WP_234965505.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1499 a.a.        Molecular weight: 167304.91 Da        Isoelectric Point: 4.3566

>NTDB_id=391951 GBN93_RS04485 WP_234965501.1 967662..972161(+) (chpA) [Acinetobacter johnsonii strain AJ413]
MKEILKHLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVDLDPLFEKWYAEPTHQETLLSIRRHFHTLKGSGRMVGAKSA
GETAWAVEDTLNRVISGAVPLTATVQKFAKTVFKLFQFKLYPIFKAVQEIDLDLRPLVLIGQQLQQNQSLEPALEDLLQL
SNHLNSDNDATGLELSDIEVAESEPQVAAAPEQDDQVHDVLEETLAIFIEEAEDHLATIDQFLNADEAKVQDYNGLIRAL
HTLRGSSSMAQIEHVFNASSKVENLFKTLVQEEIVSTSKEISLLTQYAEFVRDYLHVLGRGTNEQLDVIYATFTTAWDNY
GFSIEDVDDELNPQGMVSKLIELNIDLLLDAEFEFDQRAKVEYPEYIQHLGEQAKQLLEFTNNRAAQGIHDFTSELYAGY
QALLEKPELLNVDYAYELFGQAHQEFIHLFDTLAAGQRVILTEDVHKVLNELMAFVQQDVDSTSTTAIEPVAEAIVSGNT
LQPSLDLAQISQQIASDHQYKQSNTANTDFDDDLLDIFLEEAEELLMGMDQDLNTWSKNGNDPAALNNLMRYLHTLKGGA
NMISAPFIGSIAHELESIYERVIRQQIATTPQLISIIRLVQDDVTDRIQVIRTEKVDYPATATINVLHNIQSLVEGTTVT
TTVSEPLVEAVVAAIEETQPLVQEPLSNVDRIIEVEITAVESATAIEEPSIVDNTDVTVVEQLDTPSLVQEEAVSAVEEA
ASLLSIVEETFLEEAEEILATTDGLLKQWTEQRSDRSVLLQLQRAAHSLKGGARMAENEPVGAIAYELETTFEQFAVHNF
SSNVYDPLLQTAFEWLKQAIFKRDFSNYDGLKNSLASIDYVDVIAQLPTRVTQIDLLNAVPSFEFVQGDGTEPPAMLGEW
KETTHLDGGNEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSE
NSRYADFDPLEMDQYSSLNQLSKSLAESASDLVDFKSTLAEKIRDAEGLLLQQSRIQAEIQESLMRTRLVPFSRMLPRLQ
RIVRQTASTLNRPTELVVHNTEGELDRTILERLVTPFEHMLRNAIDHGIEDAEQRSAAKKSATGQIELNISRQGTDVIVS
FKDDGKGIDESTIKAKALNLGLIKADQVLDKQEILQFIFHPGFSTAKEVTQISGRGVGLDVVQSEIKALGGHVTVESEIG
LGTTFIIRVPTTVAVSDALMVKAGDQQYAIPLAQIDRIVRIAPTALDHYFHSKDDQFKIDGVSYKLRYLSEFLSNQPIPR
LSNIGHSLPVLLIKGNSGQTIALLVDQLIGSRAQIVVKPVGQQFASIGAIAGATILGDGHVCLILDGQNIARQILSTKRV
THAADHRDFGRHQDMRRLVMIVDDSVTVRKVTSRLLERQGFDIVTAKDGVDAMEQLESVKPDLMLLDIEMPRMDGFEVTN
LVRHHEIHQNLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLLAENQG

Nucleotide


Download         Length: 4500 bp        

>NTDB_id=391951 GBN93_RS04485 WP_234965501.1 967662..972161(+) (chpA) [Acinetobacter johnsonii strain AJ413]
ATGAAAGAAATATTAAAACATTTAGTTGAAACGACAACGCTTCCGGAAGATAGTTATCTAGATCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAAGAAATTGAAGAAATCTTCGTTGACTTAGATCCATTATTTGAAAAGTGGTACGCTGAACCGACAC
ATCAAGAAACTTTGTTGAGCATACGCCGTCATTTCCATACCTTAAAAGGCTCTGGTCGTATGGTGGGGGCAAAGTCAGCA
GGTGAAACAGCGTGGGCAGTTGAAGACACCTTAAACCGTGTGATTTCAGGGGCTGTACCGCTTACGGCAACGGTTCAAAA
ATTTGCTAAAACAGTATTCAAACTGTTTCAATTTAAACTGTATCCGATATTCAAAGCGGTACAGGAGATTGATCTTGACC
TTCGACCACTGGTTTTAATTGGACAACAATTACAACAAAATCAAAGTTTAGAACCTGCACTAGAAGATTTGCTACAACTG
TCTAATCATCTAAATAGTGATAATGATGCGACAGGATTAGAGCTGAGTGATATCGAAGTGGCTGAATCTGAGCCACAAGT
TGCAGCTGCTCCTGAACAGGATGATCAAGTGCATGATGTCCTAGAAGAAACTTTAGCGATCTTCATTGAAGAGGCGGAAG
ATCATTTAGCAACTATCGATCAGTTTTTAAATGCAGATGAAGCAAAAGTACAAGATTACAATGGTTTAATCCGTGCTTTA
CATACACTGCGCGGTAGCTCGTCTATGGCGCAAATTGAGCATGTTTTTAATGCCAGCTCAAAAGTCGAAAATCTATTTAA
AACCTTGGTTCAAGAAGAGATCGTTTCTACCTCAAAGGAAATCTCTTTACTCACCCAATATGCTGAATTTGTACGTGACT
ATTTACACGTGCTTGGGCGTGGTACGAACGAACAGCTTGACGTGATTTACGCCACGTTCACTACGGCTTGGGATAACTAT
GGTTTCAGTATTGAAGACGTAGATGATGAGCTAAACCCACAAGGTATGGTCTCGAAGCTGATCGAGTTAAATATTGATCT
GTTGCTTGATGCCGAGTTTGAGTTTGATCAGCGTGCTAAGGTTGAATATCCTGAATATATTCAGCACTTAGGTGAACAAG
CAAAACAATTGCTAGAATTTACCAATAACCGTGCTGCTCAAGGAATTCATGACTTTACTTCTGAGTTATATGCGGGTTAT
CAAGCCTTACTGGAAAAGCCAGAATTACTTAATGTAGACTATGCATATGAGTTATTTGGTCAGGCACATCAAGAATTTAT
CCATTTATTTGATACTTTAGCAGCTGGTCAGCGCGTCATTCTGACTGAAGATGTACATAAAGTTCTGAATGAATTAATGG
CCTTTGTACAGCAAGATGTTGATTCGACTTCGACGACGGCAATTGAACCTGTTGCTGAGGCTATTGTTTCTGGAAATACT
TTACAACCAAGCCTTGATCTTGCACAGATTTCGCAGCAAATTGCATCGGATCATCAGTACAAGCAATCGAATACAGCCAA
TACCGATTTTGATGATGATTTGCTTGATATCTTCTTGGAAGAAGCTGAAGAATTATTGATGGGGATGGATCAGGATCTTA
ATACTTGGTCTAAAAATGGCAATGATCCAGCAGCACTCAACAATTTAATGCGTTATTTGCACACCTTAAAAGGTGGTGCC
AATATGATTTCTGCACCTTTTATTGGTTCGATTGCACACGAATTAGAGTCTATTTATGAGCGTGTGATTCGTCAGCAAAT
AGCCACAACGCCACAGTTGATCAGCATCATTCGCTTAGTACAGGATGACGTCACAGACCGAATTCAGGTCATTCGTACCG
AGAAGGTTGATTATCCAGCAACAGCGACGATCAATGTACTGCATAACATTCAGAGCTTAGTTGAGGGTACGACTGTTACA
ACTACAGTATCTGAGCCTTTGGTTGAGGCGGTTGTCGCAGCAATTGAAGAGACTCAACCTCTAGTTCAAGAACCTTTATC
TAATGTAGACAGAATAATTGAAGTTGAAATAACTGCTGTTGAGTCAGCAACTGCGATTGAAGAGCCGAGTATAGTTGATA
ACACTGACGTTACTGTCGTTGAACAGCTGGATACTCCGTCACTTGTCCAAGAAGAAGCAGTCAGCGCTGTTGAAGAAGCA
GCTAGTCTTTTATCAATTGTTGAAGAAACCTTCTTGGAAGAAGCTGAAGAAATTTTAGCGACTACGGATGGCTTACTGAA
ACAGTGGACTGAACAACGTAGTGACCGTAGTGTGTTACTGCAATTGCAACGTGCTGCGCACAGCTTAAAAGGCGGCGCGC
GTATGGCGGAGAATGAACCCGTTGGTGCGATTGCTTATGAACTAGAAACTACATTTGAGCAATTTGCTGTACATAATTTC
AGTTCAAACGTGTATGACCCATTATTGCAAACTGCATTTGAATGGTTAAAACAAGCCATCTTCAAACGTGATTTTAGTAA
TTATGATGGTTTGAAAAATAGCTTAGCATCTATTGATTATGTGGATGTGATTGCGCAATTACCGACGCGTGTAACTCAAA
TTGATTTACTCAATGCGGTACCAAGTTTTGAGTTTGTGCAGGGTGATGGTACTGAGCCGCCAGCAATGCTGGGTGAGTGG
AAAGAAACGACTCACTTGGATGGCGGTAATGAGATGATCCGTATCTCAGCTGATTTGGTTGAAAAAATGATCGACCTGTC
CGGTGAAAATGCAATTAACCGTTCACGTATTGAAATGGATTTAGGTCAACTCGGCAATACGTTGAACGAGATGGAGCTTG
CAATTAAGCGTTTGGCAGATCAGTTACGTCGAATGGAAGGCGAGCTTGAGAGTCAAATTATTGCGAAGCATGGTTCTGAA
AACTCGCGCTACGCAGACTTTGACCCCTTGGAAATGGACCAATATTCATCGCTGAATCAATTGTCTAAATCCTTAGCCGA
ATCAGCTTCGGATTTGGTCGACTTCAAGAGCACTTTGGCTGAGAAAATTCGTGATGCGGAAGGCTTATTATTACAACAAT
CCCGTATTCAAGCAGAGATTCAAGAAAGCTTAATGCGGACACGTTTGGTACCGTTTTCACGTATGTTGCCTCGTTTGCAG
CGTATTGTGCGTCAGACCGCATCAACCTTAAACCGCCCAACGGAATTAGTCGTTCATAACACCGAAGGTGAGTTGGATCG
TACGATTCTTGAACGTTTGGTTACGCCGTTTGAGCATATGCTACGTAACGCAATCGACCACGGTATTGAAGATGCGGAAC
AACGTAGCGCTGCGAAAAAATCAGCGACAGGCCAAATTGAACTAAACATTAGCCGTCAAGGTACAGACGTTATCGTCAGC
TTTAAAGATGATGGTAAAGGTATTGATGAAAGCACGATTAAAGCGAAAGCGCTAAACTTAGGTTTAATTAAAGCCGATCA
AGTGTTGGATAAACAGGAAATCTTACAGTTTATTTTCCATCCGGGTTTCAGTACGGCCAAAGAAGTGACGCAAATTTCTG
GACGTGGTGTCGGTCTTGATGTGGTGCAAAGTGAAATTAAAGCACTGGGTGGACATGTTACGGTTGAGTCGGAAATTGGA
CTCGGTACGACCTTCATTATTCGCGTACCGACTACGGTAGCGGTGAGTGATGCCTTGATGGTGAAAGCAGGCGATCAACA
ATATGCGATTCCATTGGCGCAGATTGATCGTATTGTGCGTATTGCTCCAACAGCATTGGATCACTATTTCCACAGCAAAG
ATGACCAATTCAAAATTGATGGTGTGAGTTATAAACTGCGCTATTTATCTGAGTTTTTATCTAATCAGCCGATTCCGCGT
TTGAGTAATATTGGACATTCATTGCCGGTGTTATTGATTAAAGGCAATAGTGGACAAACCATTGCCTTATTGGTTGATCA
GCTGATTGGTTCACGTGCGCAAATTGTAGTGAAGCCCGTTGGACAACAGTTTGCCAGCATTGGTGCAATTGCGGGTGCAA
CGATTTTGGGTGATGGTCATGTCTGCTTGATTTTAGATGGTCAGAACATCGCACGTCAGATTTTAAGTACCAAGCGTGTA
ACGCATGCAGCCGATCACCGTGACTTTGGTCGTCATCAGGATATGCGTCGTTTAGTGATGATTGTGGATGACTCGGTCAC
GGTTCGTAAGGTCACATCGCGCTTATTAGAGCGCCAAGGCTTTGATATTGTGACTGCTAAAGACGGTGTCGATGCGATGG
AGCAGTTGGAGAGCGTTAAACCAGACTTGATGTTGCTGGATATTGAAATGCCACGTATGGATGGTTTCGAAGTAACGAAC
TTGGTTCGTCACCATGAAATTCACCAGAACTTGCCGATTATTATGATTACATCGCGTACGGGTGAAAAACACCGTGAACG
TGCTTTCAGCTTGGGTGTGACGCACTACATGGGCAAACCATTCCAAGAGGCAGAATTACTTGCCAACATTCAGCAGCTAT
TGGCTGAAAATCAGGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.672

100

0.614


Multiple sequence alignment