Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HK442_RS06615 Genome accession   NZ_CP053392
Coordinates   1417473..1418522 (+) Length   349 a.a.
NCBI ID   WP_001917379.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP9192     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1412473..1423522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK442_RS06600 (HK442_06565) - 1413053..1414891 (+) 1839 WP_001917382.1 hypothetical protein -
  HK442_RS06605 (HK442_06570) asd 1415056..1416096 (-) 1041 WP_001917381.1 aspartate-semialdehyde dehydrogenase -
  HK442_RS06610 (HK442_06575) hisS 1416083..1417411 (-) 1329 WP_001917380.1 histidine--tRNA ligase -
  HK442_RS06615 (HK442_06580) waaF 1417473..1418522 (+) 1050 WP_001917379.1 lipopolysaccharide heptosyltransferase II Regulator
  HK442_RS06620 (HK442_06585) - 1418716..1419042 (-) 327 WP_000744162.1 hypothetical protein -
  HK442_RS06625 (HK442_06590) - 1419261..1420250 (+) 990 WP_001917341.1 aldo/keto reductase -
  HK442_RS06630 (HK442_06595) fusA 1420814..1422892 (-) 2079 WP_171440605.1 elongation factor G -
  HK442_RS06635 (HK442_06600) rpsG 1422904..1423371 (-) 468 WP_001254365.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39452.09 Da        Isoelectric Point: 9.2340

>NTDB_id=391950 HK442_RS06615 WP_001917379.1 1417473..1418522(+) (waaF) [Helicobacter pylori strain HP9192]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKNHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFH
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHAAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=391950 HK442_RS06615 WP_001917379.1 1417473..1418522(+) (waaF) [Helicobacter pylori strain HP9192]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAAAACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCGGCTTTTTTGCTTTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGCGGCTGCTAGCGCGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.861

99.14

0.375

Multiple sequence alignment