Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GBN93_RS01110 Genome accession   NZ_CP045103
Coordinates   237305..238873 (-) Length   522 a.a.
NCBI ID   WP_234965156.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ413     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 232305..243873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN93_RS01095 (GBN93_01110) gpmI 233122..234669 (+) 1548 WP_087014488.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  GBN93_RS01100 (GBN93_01115) - 234688..235863 (+) 1176 WP_004692840.1 S41 family peptidase -
  GBN93_RS01105 (GBN93_01120) pilR 235868..237232 (-) 1365 WP_412674384.1 sigma-54-dependent transcriptional regulator Regulator
  GBN93_RS01110 (GBN93_01125) pilS 237305..238873 (-) 1569 WP_234965156.1 sensor histidine kinase Regulator
  GBN93_RS01115 (GBN93_01130) - 238895..239530 (-) 636 WP_010325697.1 response regulator -
  GBN93_RS01120 (GBN93_01135) - 239746..240801 (+) 1056 WP_159153606.1 serine hydrolase -
  GBN93_RS01125 (GBN93_01140) thrC 240888..242027 (-) 1140 WP_125273422.1 threonine synthase -
  GBN93_RS01130 (GBN93_01145) - 242093..243397 (-) 1305 WP_168159857.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59711.18 Da        Isoelectric Point: 6.1037

>NTDB_id=391937 GBN93_RS01110 WP_234965156.1 237305..238873(-) (pilS) [Acinetobacter johnsonii strain AJ413]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKHVRMRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFASSVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACALLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQTNDPQQELLQNMITKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLLDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIQIRVYSYKNLVHIEVCDFGEGVATQDQSTLFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=391937 GBN93_RS01110 WP_234965156.1 237305..238873(-) (pilS) [Acinetobacter johnsonii strain AJ413]
ATGCTGCAATACTCAACCAATATTCAATTAAATCAATACCGTTTAGGTGTTTGGTATGCGTCTTATCGACTGTTTATTGG
CTGTTGTTTGTTGTTGGTTTATCTGCTGACCTATGAGCAGCTGTTTTCCAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGCATGTGCGCATGCGCATACCACTTCAGCTC
ACCTTGCTGTTTATCGTCGATGTCATTAGCCTCAGCTTACTCACTTTCGCCACCGATGGTCCAAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCTCTTCTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACGTTGATTGCTGTGA
TTACACTGGTTTATCAACACTTTATTGGAACGCTATTTTCAATTAGTTCACTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCAGTACGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAGTCCCAAGAACTGGACCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTGCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCATGTGCATTATTGGGTATCTCTCCAATTTATGCCTATGACAAA
TACCCCTTATATAAGGCACAGCCTGATTTATTTGAACTACTCAAATTCGACCAACTGAAAAATGGAGAAAAATTCCAATT
TACATCCCAGCTGAGTCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAATCAGACACTGACCTTATTCG
TGCTGCAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGCATT
GCACATGAAATTCGCAACCCACTGGCAGCCATCACACAAGCTAATGAACTAATGCAAACCAATGATCCACAACAAGAACT
GTTGCAGAACATGATTACCAAACAAGCCTCAAGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACCTTGATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTAGAAGATTTGCTCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTAAGGCAAGTGCTGATCAACCTGATTCG
AAACGCCATTCGGCATAATGCAGCTGAAGCCGAGCATATTCAAATTCGTGTCTATAGCTACAAAAATCTCGTCCATATTG
AGGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAAGCACCCTGTTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

60.077

99.808

0.6

Multiple sequence alignment