Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GBN68_RS14565 Genome accession   NZ_CP045101
Coordinates   2980192..2980839 (+) Length   215 a.a.
NCBI ID   WP_234954361.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ210     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2975192..2985839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN68_RS14545 (GBN68_14565) - 2976324..2976701 (-) 378 WP_029575123.1 hypothetical protein -
  GBN68_RS14550 (GBN68_14570) - 2976886..2977119 (-) 234 WP_029575124.1 DUF6500 family protein -
  GBN68_RS14555 (GBN68_14575) - 2977311..2978126 (-) 816 WP_234954357.1 NAD-dependent epimerase/dehydratase family protein -
  GBN68_RS14560 (GBN68_14580) recG 2978160..2980205 (+) 2046 WP_234954359.1 ATP-dependent DNA helicase RecG -
  GBN68_RS14565 (GBN68_14585) comF 2980192..2980839 (+) 648 WP_234954361.1 ComF family protein Machinery gene
  GBN68_RS14570 (GBN68_14590) - 2980840..2981244 (-) 405 WP_234954363.1 NUDIX hydrolase -
  GBN68_RS14575 (GBN68_14595) - 2981241..2981840 (-) 600 WP_004977937.1 TIGR00730 family Rossman fold protein -
  GBN68_RS14580 (GBN68_14600) - 2981993..2983006 (+) 1014 WP_004691361.1 CorA family divalent cation transporter -
  GBN68_RS14585 (GBN68_14605) - 2983089..2983376 (-) 288 WP_234954365.1 lipid asymmetry maintenance protein MlaB -
  GBN68_RS14590 (GBN68_14610) - 2983388..2984023 (-) 636 WP_004691364.1 phospholipid-binding protein MlaC -
  GBN68_RS14595 (GBN68_14615) - 2984044..2984718 (-) 675 WP_234954368.1 outer membrane lipid asymmetry maintenance protein MlaD -
  GBN68_RS14600 (GBN68_14620) mlaE 2984718..2985497 (-) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24840.00 Da        Isoelectric Point: 8.9570

>NTDB_id=391922 GBN68_RS14565 WP_234954361.1 2980192..2980839(+) (comF) [Acinetobacter johnsonii strain AJ210]
MPMFSHLLHTAKQLLHKAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTVEKQELSIHVAGQYQYPLDHLIQQFKYEQQLN
WQPLLSGILHQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQFNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYAKLYRRILILDDVVTTGSSIQALSLQLEQLGCHKVSAACIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=391922 GBN68_RS14565 WP_234954361.1 2980192..2980839(+) (comF) [Acinetobacter johnsonii strain AJ210]
ATGCCTATGTTTAGTCATTTACTGCACACCGCCAAACAGTTGCTACACAAAGCACAGCCTTGTCAGTTGTGTGGCATTGT
ACGAGCAGATCTGCATTCGGTCTGTCTGGACTGCTGGCAACAACTTCCACTACATCCACAGACCGTTGAAAAACAAGAAC
TGAGTATTCATGTCGCAGGACAGTATCAATATCCTTTAGATCACCTTATTCAGCAGTTCAAATATGAACAACAACTGAAT
TGGCAGCCTCTACTGTCAGGCATTCTTCATCAAATTCGCTTACCTAAAGTACAAGCAATTGTTCCGATGCCGATTTCGAC
CCAGCGTTTAGCGGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTCAATGTTCCCATTT
GGCAACCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTACGCAAAACTCTACCGGCGTATTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCCCTGAGTTTGCAGCTTGAACAATTGGGTTGTCATAAAGTCAGCGCTGCGTGTATTGCCTATGCAC
TTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.186

90.233

0.507
  comF Acinetobacter baumannii D1279779

56.186

90.233

0.507

Multiple sequence alignment