Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   GBN68_RS07165 Genome accession   NZ_CP045101
Coordinates   1502290..1502910 (+) Length   206 a.a.
NCBI ID   WP_234956114.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ210     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1497290..1507910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN68_RS07130 (GBN68_07165) kdsB 1497695..1498456 (+) 762 WP_148825943.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GBN68_RS07135 (GBN68_07170) - 1498476..1499459 (+) 984 WP_234956100.1 DNA polymerase III subunit delta' -
  GBN68_RS07140 (GBN68_07175) - 1499474..1499815 (+) 342 WP_058869739.1 PilZ domain-containing protein -
  GBN68_RS07145 (GBN68_07180) - 1499842..1500615 (+) 774 WP_078425022.1 TatD family hydrolase -
  GBN68_RS07150 (GBN68_07185) - 1500661..1501275 (+) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  GBN68_RS07155 (GBN68_07190) - 1501288..1501857 (+) 570 WP_234956110.1 type II secretion system protein -
  GBN68_RS07160 (GBN68_07195) xcpV 1501892..1502293 (+) 402 WP_234956112.1 type II secretion system minor pseudopilin GspI Machinery gene
  GBN68_RS07165 (GBN68_07200) xcpW 1502290..1502910 (+) 621 WP_234956114.1 type II secretion system minor pseudopilin GspJ Machinery gene
  GBN68_RS07170 (GBN68_07205) gspK 1502989..1503939 (+) 951 WP_234956116.1 type II secretion system minor pseudopilin GspK -
  GBN68_RS07175 (GBN68_07210) - 1504062..1504658 (+) 597 WP_004696854.1 6-pyruvoyl trahydropterin synthase family protein -
  GBN68_RS07180 (GBN68_07215) ung 1504700..1505413 (+) 714 WP_004696856.1 uracil-DNA glycosylase -
  GBN68_RS07185 (GBN68_07220) - 1505410..1506531 (+) 1122 WP_234956118.1 enoyl-CoA hydratase/isomerase family protein -
  GBN68_RS07190 (GBN68_07225) tadA 1506537..1507037 (+) 501 WP_005401161.1 tRNA adenosine(34) deaminase TadA -
  GBN68_RS07195 (GBN68_07230) - 1507114..1507545 (+) 432 WP_004696860.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23593.18 Da        Isoelectric Point: 5.9785

>NTDB_id=391911 GBN68_RS07165 WP_234956114.1 1502290..1502910(+) (xcpW) [Acinetobacter johnsonii strain AJ210]
MTKRSGFTLVELLVAIAIFAVLSALGWKVFDYLIKIKERNTQHEQRLGQLQEAYQQVLRDTVQIVPITANVAGQVQPAVM
LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQTGNDQPETSVLLDSVDQFQIMLLNPNEMTKWP
EVALSENDVTQAKILPRGLKINLTVNEVSYEWVFSLLNTDFLKQKN

Nucleotide


Download         Length: 621 bp        

>NTDB_id=391911 GBN68_RS07165 WP_234956114.1 1502290..1502910(+) (xcpW) [Acinetobacter johnsonii strain AJ210]
ATGACAAAACGCTCAGGCTTTACTTTGGTTGAGTTGTTGGTGGCAATCGCGATTTTTGCTGTGCTTTCAGCTTTGGGTTG
GAAGGTTTTTGATTATCTGATCAAGATTAAAGAGCGTAATACCCAACATGAACAGCGCTTAGGTCAGCTACAAGAAGCAT
ATCAACAAGTGTTGCGTGACACTGTGCAAATTGTACCAATTACTGCCAATGTTGCGGGGCAGGTTCAACCCGCAGTCATG
TTGCAAAATGGTCAGTTGACCTTTAGTAAAACTGGCGTGACTGATCCTTTAATGCAAGGCATACCGCCTGAAGAGCGAGT
TGAATATATTTATAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAACCGGTAATGATCAAC
CTGAAACCAGTGTTTTACTGGATTCAGTTGATCAATTTCAAATTATGTTACTTAACCCCAATGAAATGACAAAATGGCCT
GAGGTGGCATTGAGTGAAAATGATGTAACTCAGGCAAAAATACTACCGCGCGGTTTAAAAATAAACCTCACTGTCAATGA
AGTGAGTTATGAATGGGTGTTTAGTTTATTAAATACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

59.701

97.573

0.583

Multiple sequence alignment