Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | GBN68_RS07160 | Genome accession | NZ_CP045101 |
| Coordinates | 1501892..1502293 (+) | Length | 133 a.a. |
| NCBI ID | WP_234956112.1 | Uniprot ID | - |
| Organism | Acinetobacter johnsonii strain AJ210 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1496892..1507293
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GBN68_RS07130 (GBN68_07165) | kdsB | 1497695..1498456 (+) | 762 | WP_148825943.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| GBN68_RS07135 (GBN68_07170) | - | 1498476..1499459 (+) | 984 | WP_234956100.1 | DNA polymerase III subunit delta' | - |
| GBN68_RS07140 (GBN68_07175) | - | 1499474..1499815 (+) | 342 | WP_058869739.1 | PilZ domain-containing protein | - |
| GBN68_RS07145 (GBN68_07180) | - | 1499842..1500615 (+) | 774 | WP_078425022.1 | TatD family hydrolase | - |
| GBN68_RS07150 (GBN68_07185) | - | 1500661..1501275 (+) | 615 | WP_004696845.1 | TetR/AcrR family transcriptional regulator | - |
| GBN68_RS07155 (GBN68_07190) | - | 1501288..1501857 (+) | 570 | WP_234956110.1 | type II secretion system protein | - |
| GBN68_RS07160 (GBN68_07195) | xcpV | 1501892..1502293 (+) | 402 | WP_234956112.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| GBN68_RS07165 (GBN68_07200) | xcpW | 1502290..1502910 (+) | 621 | WP_234956114.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| GBN68_RS07170 (GBN68_07205) | gspK | 1502989..1503939 (+) | 951 | WP_234956116.1 | type II secretion system minor pseudopilin GspK | - |
| GBN68_RS07175 (GBN68_07210) | - | 1504062..1504658 (+) | 597 | WP_004696854.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| GBN68_RS07180 (GBN68_07215) | ung | 1504700..1505413 (+) | 714 | WP_004696856.1 | uracil-DNA glycosylase | - |
| GBN68_RS07185 (GBN68_07220) | - | 1505410..1506531 (+) | 1122 | WP_234956118.1 | enoyl-CoA hydratase/isomerase family protein | - |
| GBN68_RS07190 (GBN68_07225) | tadA | 1506537..1507037 (+) | 501 | WP_005401161.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 133 a.a. Molecular weight: 14551.68 Da Isoelectric Point: 9.1249
>NTDB_id=391910 GBN68_RS07160 WP_234956112.1 1501892..1502293(+) (xcpV) [Acinetobacter johnsonii strain AJ210]
MKCHLINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISANVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDGSQP
MKCHLINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISANVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDGSQP
Nucleotide
Download Length: 402 bp
>NTDB_id=391910 GBN68_RS07160 WP_234956112.1 1501892..1502293(+) (xcpV) [Acinetobacter johnsonii strain AJ210]
ATGAAATGCCATCTCATTAATCCTCGCTCAGGATTTACATTGCTAGAAGTGATGGTGGCGCTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCATGCCATCTTGCGTACCAAGGCGCAATTTG
TTGCCTTGAATGAAATTTCGATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATTAGTGCTAATGTGCAACGCGTCAATGTACAGGTGAGCTT
GGTGAATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGTCAACCAT
GA
ATGAAATGCCATCTCATTAATCCTCGCTCAGGATTTACATTGCTAGAAGTGATGGTGGCGCTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCATGCCATCTTGCGTACCAAGGCGCAATTTG
TTGCCTTGAATGAAATTTCGATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATTAGTGCTAATGTGCAACGCGTCAATGTACAGGTGAGCTT
GGTGAATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGTCAACCAT
GA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
75.214 |
87.97 |
0.662 |