Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GBN68_RS00965 Genome accession   NZ_CP045101
Coordinates   209567..211135 (-) Length   522 a.a.
NCBI ID   WP_148826905.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ210     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 204567..216135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN68_RS00950 (GBN68_00955) gpmI 205384..206931 (+) 1548 WP_087014488.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  GBN68_RS00955 (GBN68_00960) - 207016..208125 (+) 1110 WP_410487277.1 S41 family peptidase -
  GBN68_RS00960 (GBN68_00965) pilR 208130..209494 (-) 1365 WP_410487276.1 sigma-54-dependent transcriptional regulator Regulator
  GBN68_RS00965 (GBN68_00970) pilS 209567..211135 (-) 1569 WP_148826905.1 sensor histidine kinase Regulator
  GBN68_RS00970 (GBN68_00975) - 211157..211792 (-) 636 WP_010325697.1 response regulator -
  GBN68_RS00975 (GBN68_00980) - 212008..213063 (+) 1056 WP_005400997.1 serine hydrolase -
  GBN68_RS00980 (GBN68_00985) thrC 213149..214288 (-) 1140 WP_004692833.1 threonine synthase -
  GBN68_RS00985 (GBN68_00990) - 214354..215658 (-) 1305 WP_234955037.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59639.20 Da        Isoelectric Point: 6.5958

>NTDB_id=391895 GBN68_RS00965 WP_148826905.1 209567..211135(-) (pilS) [Acinetobacter johnsonii strain AJ210]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKNVRKRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFAACVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACTLLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIKIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQTNDPQQELLQTMIAKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIQIRVYSYKNLVHIEVCDFGEGVATQDQTALFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=391895 GBN68_RS00965 WP_148826905.1 209567..211135(-) (pilS) [Acinetobacter johnsonii strain AJ210]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTCTAGGTGTTTGGTATGCGTCTTATCGACTGTTTATTGG
CTGTTGTTTGTTGTTGGTTTATCTACTGACTTATGAGCAGCTATTTTCAAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGAATGTGCGCAAGCGCATACCACTTCAGCTC
ACCTTGTTGTTTATCGTCGATGTCATTAGCCTCAGTTTACTCACTTTTGCCACCGATGGTCCGAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCGCTTGTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACCTTGATTGCTGTAA
TTACACTGGTTTATCAACACTTTATTGGAACGCTATTTTCAATTAGTTCATTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCAGTACGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAGTCCCAAGAACTGGACCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACAGAGCTCGGCTATTTGGTGCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCATGTACATTATTGGGCATCTCCCCGATTTATGCCTATGACAAA
TACCCCTTATATAAGGCGCAACCTGATTTATTTGAACTACTCAAATTCGACCAACTGAAAAATGGGGAAAAATTCCAATT
TACATCGCAACTGAGTCGCTTTCAGATTCAGATCAAAATTCAAAAACTTCAAGTCCCGAATCAGACACTGACCTTATTCG
TGCTGCAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCCGCACTGGGTCAACTTTCTGCCAGCATT
GCACATGAAATTCGCAACCCACTGGCAGCCATCACACAAGCTAATGAACTAATGCAAACCAATGATCCACAACAAGAACT
GTTGCAGACCATGATTGCCAAACAAGCCTCAAGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACCTTAATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGGCAAGTGCTGATCAACCTGATTCG
AAACGCCATTCGGCATAATGCAGCTGAAGCCGAGCACATTCAAATTCGTGTCTATAGCTACAAAAACCTCGTCCATATTG
AGGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAACCGCCCTGTTTCAACCGTTTTTTAGTACCTCCATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.885

99.808

0.598

Multiple sequence alignment