Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   GBN68_RS00725 Genome accession   NZ_CP045101
Coordinates   153224..154378 (-) Length   384 a.a.
NCBI ID   WP_168159500.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ210     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 148224..159378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN68_RS00700 (GBN68_00695) - 148571..149116 (-) 546 WP_234954982.1 glutathione peroxidase -
  GBN68_RS00705 (GBN68_00700) - 149240..149794 (-) 555 WP_005401885.1 hypothetical protein -
  GBN68_RS00710 (GBN68_00705) - 150132..151052 (+) 921 WP_004984057.1 DMT family transporter -
  GBN68_RS00715 (GBN68_00710) - 151453..152022 (-) 570 WP_234954984.1 L-threonylcarbamoyladenylate synthase -
  GBN68_RS00720 (GBN68_00715) dprA 152068..153201 (-) 1134 WP_234954986.1 DNA-processing protein DprA Machinery gene
  GBN68_RS00725 (GBN68_00720) tsaP 153224..154378 (-) 1155 WP_168159500.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GBN68_RS00730 (GBN68_00725) def 154499..155032 (+) 534 WP_004684452.1 peptide deformylase -
  GBN68_RS00735 (GBN68_00730) - 155124..155561 (+) 438 WP_148826925.1 DUF2946 family protein -
  GBN68_RS00740 (GBN68_00735) - 155632..157698 (+) 2067 WP_234954996.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42268.23 Da        Isoelectric Point: 7.8309

>NTDB_id=391892 GBN68_RS00725 WP_168159500.1 153224..154378(-) (tsaP) [Acinetobacter johnsonii strain AJ210]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVISTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVASAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKISPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=391892 GBN68_RS00725 WP_168159500.1 153224..154378(-) (tsaP) [Acinetobacter johnsonii strain AJ210]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCAGGCGTCATTTCAACAGCTCAAGCTGCACCTACACGAAATTACAATCCACCTGCTTTAAAAGCCAATG
CACCGAATGTTTATGTGGTGAAAAAAGGCGATACCCTTTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCGGGTGACCGCTTACTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGACGAAGGCGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTGATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTCTAGAAGGTACACCATATATCGTTGGTGCTGCCGATCAGCGTGTGATTGCAGG
CAAAGGCCAAACTGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGCTTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGACGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCGAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGCAACATCATGGTATTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAAATTTCTCCCTCTGTAGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.494

100

0.667

Multiple sequence alignment