Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   GBN68_RS00720 Genome accession   NZ_CP045101
Coordinates   152068..153201 (-) Length   377 a.a.
NCBI ID   WP_234954986.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ210     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 147068..158201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN68_RS00690 (GBN68_00685) - 147274..147864 (-) 591 WP_148826930.1 hypothetical protein -
  GBN68_RS00695 (GBN68_00690) - 147997..148371 (-) 375 WP_058868684.1 RcnB family protein -
  GBN68_RS00700 (GBN68_00695) - 148571..149116 (-) 546 WP_234954982.1 glutathione peroxidase -
  GBN68_RS00705 (GBN68_00700) - 149240..149794 (-) 555 WP_005401885.1 hypothetical protein -
  GBN68_RS00710 (GBN68_00705) - 150132..151052 (+) 921 WP_004984057.1 DMT family transporter -
  GBN68_RS00715 (GBN68_00710) - 151453..152022 (-) 570 WP_234954984.1 L-threonylcarbamoyladenylate synthase -
  GBN68_RS00720 (GBN68_00715) dprA 152068..153201 (-) 1134 WP_234954986.1 DNA-processing protein DprA Machinery gene
  GBN68_RS00725 (GBN68_00720) tsaP 153224..154378 (-) 1155 WP_168159500.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GBN68_RS00730 (GBN68_00725) def 154499..155032 (+) 534 WP_004684452.1 peptide deformylase -
  GBN68_RS00735 (GBN68_00730) - 155124..155561 (+) 438 WP_148826925.1 DUF2946 family protein -
  GBN68_RS00740 (GBN68_00735) - 155632..157698 (+) 2067 WP_234954996.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41636.19 Da        Isoelectric Point: 6.5445

>NTDB_id=391891 GBN68_RS00720 WP_234954986.1 152068..153201(-) (dprA) [Acinetobacter johnsonii strain AJ210]
MLNSLSHEQIATITLWYLVQHSLSSFQKLQQHFGTSTKAVTASNLQIWPNLGLHKSHLQRVAEIQTPAGQIKLQTLLQDV
QASCDFILLDTESHYPSQLLPYADRPPILFGQGNPQSLLQPQVAIVGSRKPSPHGKQVAYDFAYYLAEKGFYICSGLAEG
IDAAAHQGGLKYQRTIAVMGTGLDLTYPSQHQTLRTQILENNGCIITEFLPHTPPLQHNFPRRNRIVSALSLGVVVAEAA
LKSGSLGTAKSAADQGKTIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWHSQSQSQETTPSASIEIPS
DLLELYNQLDWVGQNMDQLNFKLNTDIATLTSQLMELEILGLAQQQAGNYLRCRSSQ

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=391891 GBN68_RS00720 WP_234954986.1 152068..153201(-) (dprA) [Acinetobacter johnsonii strain AJ210]
ATGCTGAACTCTTTATCACATGAACAGATTGCAACAATCACCCTGTGGTATTTAGTTCAGCATTCTTTATCGAGCTTTCA
AAAACTACAGCAGCATTTTGGCACAAGCACAAAAGCTGTTACTGCCTCCAACCTTCAGATCTGGCCAAATCTTGGCTTAC
ACAAAAGCCATCTACAACGTGTCGCAGAAATCCAAACACCTGCTGGCCAAATCAAATTACAAACTTTACTGCAGGACGTC
CAAGCCAGCTGTGATTTTATTTTGCTTGATACTGAAAGTCATTATCCTTCGCAGCTGCTGCCCTATGCTGACCGGCCACC
GATTTTATTTGGTCAGGGTAATCCACAAAGCCTATTACAACCTCAAGTTGCTATCGTCGGCAGTCGAAAACCCAGCCCAC
ACGGCAAACAAGTGGCTTATGACTTTGCCTATTACCTCGCCGAAAAGGGCTTTTATATTTGCAGTGGTTTGGCTGAAGGC
ATTGATGCAGCGGCACATCAGGGCGGCTTAAAATATCAACGTACCATTGCGGTGATGGGCACGGGCTTAGATCTCACTTA
CCCTTCCCAGCATCAAACACTGCGTACGCAAATATTAGAAAATAATGGCTGTATCATTACTGAATTTTTACCACATACAC
CACCTTTACAGCATAATTTTCCACGGCGCAACCGTATCGTCAGTGCATTGAGTTTAGGGGTTGTGGTTGCAGAAGCCGCA
CTCAAAAGTGGCTCTCTTGGCACAGCCAAATCTGCTGCTGATCAAGGCAAGACAATTTTTGCGATCCCCGGTCATATTTA
CAGTGAACACCATCAAGGCTGTCATCAACTGATCCGAGAAGGGGCGATTTTGGTCGATCATCCTGAGCAAATCATTGAAG
ATTTGGCACTCCCCACTCAATGGCATAGCCAATCCCAGTCACAAGAAACCACCCCAAGCGCTAGTATTGAGATCCCATCT
GATTTACTCGAACTTTATAATCAACTGGATTGGGTGGGACAAAATATGGATCAACTTAATTTCAAACTTAACACCGATAT
TGCCACACTCACTAGCCAGTTAATGGAACTGGAAATTTTGGGGCTTGCACAACAACAGGCTGGCAATTATCTTCGTTGCC
GTTCCAGCCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.489

99.735

0.663

  dprA Acinetobacter baumannii D1279779

65.426

99.735

0.653

  dprA Acinetobacter baylyi ADP1

60.63

100

0.613


Multiple sequence alignment