Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   HNO12_RS13200 Genome accession   NZ_CP053376
Coordinates   2749877..2751649 (-) Length   590 a.a.
NCBI ID   WP_024085669.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2744877..2756649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO12_RS13180 (HNO12_13220) sdhA 2745089..2746849 (-) 1761 WP_003152573.1 succinate dehydrogenase flavoprotein subunit -
  HNO12_RS13185 (HNO12_13225) sdhC 2746883..2747491 (-) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  HNO12_RS13190 (HNO12_13230) - 2747788..2748234 (+) 447 WP_003152568.1 YslB family protein -
  HNO12_RS13195 (HNO12_13235) - 2748281..2749510 (-) 1230 WP_014305531.1 aspartate kinase -
  HNO12_RS13200 (HNO12_13240) uvrC 2749877..2751649 (-) 1773 WP_024085669.1 excinuclease ABC subunit UvrC Machinery gene
  HNO12_RS13205 (HNO12_13245) trxA 2751792..2752106 (-) 315 WP_003152560.1 thioredoxin -
  HNO12_RS13210 (HNO12_13250) - 2752259..2753749 (-) 1491 WP_024085670.1 alpha-N-arabinofuranosidase -
  HNO12_RS13215 (HNO12_13255) - 2753958..2754935 (-) 978 WP_003152553.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  HNO12_RS13220 (HNO12_13260) - 2754967..2755740 (-) 774 WP_003152551.1 electron transfer flavoprotein subunit beta/FixA family protein -
  HNO12_RS13225 (HNO12_13265) - 2755754..2756533 (-) 780 WP_024085671.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68298.20 Da        Isoelectric Point: 9.6173

>NTDB_id=391872 HNO12_RS13200 WP_024085669.1 2749877..2751649(-) (uvrC) [Bacillus amyloliquefaciens strain WF02]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNREIVEDITRFLKGGHNEIKKELEAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDRDMIGEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGDALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSVFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=391872 HNO12_RS13200 WP_024085669.1 2749877..2751649(-) (uvrC) [Bacillus amyloliquefaciens strain WF02]
ATGAATAAACAACTGAAAGAAAAGCTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAAGTCTTGAAAAACAGGGTGCGGTCTTATTTCACCGGTTCTCACGACGCGAAAACCC
AACGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGTCATCCTCGGCTGATTGTCACCCGGAATGTCAAAAAAGACAAGGGACGCTATTTCGGCCCGTATCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTTTACCCGCTCAGGAAATGCTCAAAGCTTCCGGACCGCGTCTGTCTT
TATTATCATCTCGGCCAATGCCTCGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGCGAGATTGTTGAAGACAT
CACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAAGAGCTTGAAGCGAAAATGGCAGAAGCGGCCGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGACCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAGAAAATGACCATGAAT
GACCTTCTGGACCGCGATGTGTTTGCATATGCCTACGATAAAGGCTGGATGTGCGTCCAAGTCTTTTTTATACGCCAAGG
AAAACTGATCGAACGCGATGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAGTTTCTGACCTTCATCGGCCAGT
TCTATTCCAAAAACAATCACTTTCTGCCTAAGGAAATTCTGGTGCCTGACAGCGTTGACAGGGACATGATCGGCGAGCTG
TTGGAAACCGCCGTGCATCAGCCGAAAAAAGGTCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
CCTGCGGGAAAAATTCTCGTTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCAGCCGAACGGCTCGGCGACGCACTGA
ATATTTACACCCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCCGTATCGGCCATGATTGTC
TTTATAGACGGAAAACCGAATAAAAAGGAATATCGCAAATATAAAATTAAAACCGTAACAGGGCCGGACGATTACGGCTC
AATGAGGGAAGTCGTCAGAAGAAGATACACGAGGGTGCTCCGCGAAAATCTTCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGGCAGATTAACGCGGCGCGCGACGTGCTCGAGAATGAGCTCGGCCTTGATGTCCCGGTAGCGGGATTGGCG
AAAGATGATAAACACCGGACATCGAACCTTTTGATCGGCGACCCGCTTGAACCGGTGTTTCTGGAGCGGAACAGCCAAGA
GTTTTACCTGCTTCAGCGCATTCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGACAGATCCGGGGAAAAAGCG
TCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAAAAACGAAAAAAAATGCTCTTAAAACATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATCAAAAAAGCCGGTGTGCCGGCCGCGGCGGCCCAGCTGCTGTTTGAAAA
ATTAAAAAAATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrB/uvrC motif (UVR)

(198-229)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(374-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.694

99.661

0.595
  uvrC Streptococcus pneumoniae R6

59.354

99.661

0.592
  uvrC Streptococcus pneumoniae D39

59.354

99.661

0.592