Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HNO12_RS12850 Genome accession   NZ_CP053376
Coordinates   2682143..2682748 (-) Length   201 a.a.
NCBI ID   WP_003152683.1    Uniprot ID   A7Z769
Organism   Bacillus amyloliquefaciens strain WF02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2677143..2687748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO12_RS12815 (HNO12_12855) - 2677155..2677811 (-) 657 WP_003152699.1 DUF421 domain-containing protein -
  HNO12_RS12820 (HNO12_12860) - 2677978..2678364 (+) 387 WP_003152697.1 TIGR04086 family membrane protein -
  HNO12_RS12825 (HNO12_12865) yajC 2678416..2678676 (-) 261 WP_003152695.1 preprotein translocase subunit YajC -
  HNO12_RS12830 (HNO12_12870) tgt 2678708..2679853 (-) 1146 WP_014305500.1 tRNA guanosine(34) transglycosylase Tgt -
  HNO12_RS12835 (HNO12_12875) queA 2679881..2680909 (-) 1029 WP_003152692.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HNO12_RS12840 (HNO12_12880) - 2680935..2681135 (-) 201 WP_015387898.1 DUF2905 domain-containing protein -
  HNO12_RS12845 (HNO12_12885) ruvB 2681128..2682132 (-) 1005 WP_003152685.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HNO12_RS12850 (HNO12_12890) ruvA 2682143..2682748 (-) 606 WP_003152683.1 Holliday junction branch migration protein RuvA Machinery gene
  HNO12_RS12855 (HNO12_12895) - 2682883..2683392 (-) 510 WP_012118093.1 intercompartmental signaling factor BofC -
  HNO12_RS12865 (HNO12_12905) - 2683778..2684371 (-) 594 WP_003152677.1 YhcN/YlaJ family sporulation lipoprotein -
  HNO12_RS12870 (HNO12_12910) safA 2684519..2685724 (-) 1206 WP_014305504.1 SafA/ExsA family spore coat assembly protein -
  HNO12_RS12875 (HNO12_12915) nadA 2685851..2686954 (-) 1104 WP_024085652.1 quinolinate synthase NadA -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22414.85 Da        Isoelectric Point: 5.1597

>NTDB_id=391867 HNO12_RS12850 WP_003152683.1 2682143..2682748(-) (ruvA) [Bacillus amyloliquefaciens strain WF02]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=391867 HNO12_RS12850 WP_003152683.1 2682143..2682748(-) (ruvA) [Bacillus amyloliquefaciens strain WF02]
GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGCTATCA
GGTCTTTACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAAACCATTTTTACGTATCATCATATAAAAGAAGATG
CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAACGTCACCGGCATCGGGCCG
AAAGGGGCGCTCGCCATCCTCGGTTCCGGTGACCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT
GAAGCGCTTAGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z769

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

92.537

100

0.925
  ruvA Streptococcus pneumoniae R6

39.806

100

0.408
  ruvA Streptococcus pneumoniae D39

39.806

100

0.408
  ruvA Streptococcus pneumoniae TIGR4

39.806

100

0.408

Multiple sequence alignment