Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   F9230_RS10085 Genome accession   NZ_CP045099
Coordinates   2082066..2082467 (-) Length   133 a.a.
NCBI ID   WP_234950254.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ14     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2077066..2087467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS10055 (F9230_10045) tadA 2077322..2077822 (-) 501 WP_234950250.1 tRNA adenosine(34) deaminase TadA -
  F9230_RS10060 (F9230_10050) - 2077828..2078949 (-) 1122 WP_234950251.1 enoyl-CoA hydratase/isomerase family protein -
  F9230_RS10065 (F9230_10055) ung 2078946..2079659 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  F9230_RS10070 (F9230_10060) - 2079701..2080297 (-) 597 WP_004984830.1 6-pyruvoyl trahydropterin synthase family protein -
  F9230_RS10075 (F9230_10065) gspK 2080420..2081370 (-) 951 WP_234950252.1 type II secretion system minor pseudopilin GspK -
  F9230_RS10080 (F9230_10070) xcpW 2081449..2082069 (-) 621 WP_234950253.1 type II secretion system minor pseudopilin GspJ Machinery gene
  F9230_RS10085 (F9230_10075) xcpV 2082066..2082467 (-) 402 WP_234950254.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  F9230_RS10090 (F9230_10080) - 2082502..2083071 (-) 570 WP_234950256.1 type II secretion system protein -
  F9230_RS10095 (F9230_10085) - 2083084..2083698 (-) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  F9230_RS10100 (F9230_10090) - 2083744..2084517 (-) 774 WP_234950257.1 TatD family hydrolase -
  F9230_RS10105 (F9230_10095) - 2084544..2084885 (-) 342 WP_058869739.1 PilZ domain-containing protein -
  F9230_RS10110 (F9230_10100) - 2084900..2085883 (-) 984 WP_148825944.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  F9230_RS10115 (F9230_10105) kdsB 2085903..2086664 (-) 762 WP_205666743.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14631.76 Da        Isoelectric Point: 7.1632

>NTDB_id=391867 F9230_RS10085 WP_234950254.1 2082066..2082467(-) (xcpV) [Acinetobacter johnsonii strain AJ14]
MKYYFINPCSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GEIWQIDKSAQATISANVQRVNVQVSLVDTETGKVDSGVTSLVFFNHRDGSQP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=391867 F9230_RS10085 WP_234950254.1 2082066..2082467(-) (xcpV) [Acinetobacter johnsonii strain AJ14]
ATGAAATATTATTTCATTAATCCTTGCTCAGGATTTACATTGCTGGAAGTGATGGTGGCGCTGGCTATTTTTGCTACGGC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCATGCCATCTTGCGTACCAAGGCACAATTTG
TTGCCTTGAATGAAATTTCGATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAATTTGGCAAATTGATAAATCAGCGCAAGCAACGATTAGTGCTAATGTGCAACGCGTCAATGTACAGGTGAGCTT
GGTGGATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGTCAACCAT
GA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)

Type II secretion system (T2SS), protein I (T2SSI)

(48-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

73.95

89.474

0.662

Multiple sequence alignment