Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   F9230_RS01720 Genome accession   NZ_CP045099
Coordinates   380772..381419 (-) Length   215 a.a.
NCBI ID   WP_234951086.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375772..386419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS01685 (F9230_01690) mlaE 376114..376893 (+) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  F9230_RS01690 (F9230_01695) - 376893..377567 (+) 675 WP_087011667.1 outer membrane lipid asymmetry maintenance protein MlaD -
  F9230_RS01695 (F9230_01700) - 377588..378223 (+) 636 WP_004691364.1 phospholipid-binding protein MlaC -
  F9230_RS01700 (F9230_01705) - 378235..378522 (+) 288 WP_004691363.1 lipid asymmetry maintenance protein MlaB -
  F9230_RS01705 (F9230_01710) - 378605..379618 (-) 1014 WP_004691361.1 CorA family divalent cation transporter -
  F9230_RS01710 (F9230_01715) - 379771..380370 (+) 600 WP_176538338.1 TIGR00730 family Rossman fold protein -
  F9230_RS01715 (F9230_01720) - 380367..380771 (+) 405 WP_234951085.1 NUDIX hydrolase -
  F9230_RS01720 (F9230_01725) comF 380772..381419 (-) 648 WP_234951086.1 ComF family protein Machinery gene
  F9230_RS01725 (F9230_01730) recG 381406..383451 (-) 2046 WP_234951087.1 ATP-dependent DNA helicase RecG -
  F9230_RS01730 (F9230_01735) - 383485..384300 (+) 816 WP_234951088.1 NAD-dependent epimerase/dehydratase family protein -
  F9230_RS01735 (F9230_01740) - 384541..385065 (+) 525 WP_234951089.1 hypothetical protein -
  F9230_RS01740 (F9230_01745) - 385129..385422 (-) 294 WP_234951090.1 tetratricopeptide repeat protein -
  F9230_RS01745 (F9230_01750) - 385583..386023 (-) 441 WP_234951091.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24907.09 Da        Isoelectric Point: 9.1961

>NTDB_id=391854 F9230_RS01720 WP_234951086.1 380772..381419(-) (comF) [Acinetobacter johnsonii strain AJ14]
MPMFSHLLHTAKQLLHKAQPCQLCSIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYAKRYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=391854 F9230_RS01720 WP_234951086.1 380772..381419(-) (comF) [Acinetobacter johnsonii strain AJ14]
ATGCCTATGTTTAGTCATTTACTGCACACCGCCAAACAGTTGCTGCACAAAGCACAGCCTTGTCAGTTGTGTAGCATTGT
ACGCGCAGATCTGCATTCGGTCTGTCTGGACTGCTGGCAACAACTCCCACTGCATCCACAAACCATTGAAAAACAAGAGC
TGAGTATTCATGTCGCAGGGCAGTATCAATATCCTTTAGATCATCTTATTCAGCAGTTCAAATATGAACAACAACTGCAC
TGGCAACCTCTACTGTCAGGCATTCTTCAGCAAATTCGCTTACCTAAAGTACAAGCAATTGTTCCGATGCCGATTTCGAC
TCAGCGTTTAGCAGAACGTGGCTACAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAACAGTTAAATGTGCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCACAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTACGCAAAACGCTACCGGCGTGTTTTGATTTTGGATGATGTTGTGACCACAGG
CAGCTCCATTCAGGCACTGACTTTACAACTTGAACAATTGGGTTGTCATAAAGTCAGCGCTGCGTGTATTGCCTATGCAC
TTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

58.763

90.233

0.53
  comF Acinetobacter baumannii D1279779

58.763

90.233

0.53

Multiple sequence alignment