Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | F9230_RS01435 | Genome accession | NZ_CP045099 |
| Coordinates | 323944..324417 (+) | Length | 157 a.a. |
| NCBI ID | WP_168158652.1 | Uniprot ID | - |
| Organism | Acinetobacter johnsonii strain AJ14 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 318944..329417
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F9230_RS01425 (F9230_01430) | - | 319266..319988 (+) | 723 | WP_171262495.1 | pilus assembly protein PilX | - |
| F9230_RS01430 (F9230_01435) | - | 320000..323929 (+) | 3930 | WP_234951064.1 | pilus assembly protein PilY | - |
| F9230_RS01435 (F9230_01440) | comE | 323944..324417 (+) | 474 | WP_168158652.1 | type IV pilin protein | Machinery gene |
| F9230_RS01440 (F9230_01445) | - | 324418..324876 (+) | 459 | WP_234951065.1 | type IV pilin protein | - |
| F9230_RS01445 (F9230_01450) | rpsP | 325022..325279 (+) | 258 | WP_004718284.1 | 30S ribosomal protein S16 | - |
| F9230_RS01450 (F9230_01455) | rimM | 325308..325856 (+) | 549 | WP_004978035.1 | ribosome maturation factor RimM | - |
| F9230_RS01455 (F9230_01460) | trmD | 325884..326624 (+) | 741 | WP_234951066.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| F9230_RS01460 (F9230_01465) | rplS | 326765..327139 (+) | 375 | WP_004691454.1 | 50S ribosomal protein L19 | - |
| F9230_RS01465 (F9230_01470) | - | 327198..328169 (-) | 972 | WP_058870393.1 | esterase/lipase family protein | - |
| F9230_RS01470 (F9230_01475) | - | 328343..329308 (-) | 966 | WP_234951839.1 | lipase family alpha/beta hydrolase | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17176.47 Da Isoelectric Point: 6.9516
>NTDB_id=391853 F9230_RS01435 WP_168158652.1 323944..324417(+) (comE) [Acinetobacter johnsonii strain AJ14]
MKKIIKSSGFTLIELMVVVVIVAIFAAIAIPSYQEYVRRAVASQAQQEIQRLATLLDRHKARNFSYRGFTTTSAVLPVGA
TGSAIKYTLTIRDGNDPDLDLTEDDAAGRNWAIQAVSSDDKNYTMLLTSTGMRCKNKTTANVDFESCGSTANGSEEW
MKKIIKSSGFTLIELMVVVVIVAIFAAIAIPSYQEYVRRAVASQAQQEIQRLATLLDRHKARNFSYRGFTTTSAVLPVGA
TGSAIKYTLTIRDGNDPDLDLTEDDAAGRNWAIQAVSSDDKNYTMLLTSTGMRCKNKTTANVDFESCGSTANGSEEW
Nucleotide
Download Length: 474 bp
>NTDB_id=391853 F9230_RS01435 WP_168158652.1 323944..324417(+) (comE) [Acinetobacter johnsonii strain AJ14]
ATGAAAAAAATAATAAAGTCCTCTGGATTTACATTGATAGAACTAATGGTTGTTGTAGTAATTGTTGCGATTTTCGCAGC
AATTGCTATACCGTCATACCAAGAGTATGTACGACGCGCCGTAGCTAGTCAGGCACAACAAGAGATACAGCGATTAGCTA
CTTTGTTAGATCGGCATAAAGCGCGTAATTTTAGTTATCGAGGATTTACGACCACAAGTGCAGTATTACCTGTGGGAGCA
ACTGGCTCTGCGATTAAATATACATTGACGATCAGAGATGGAAATGATCCAGATTTGGATTTAACAGAGGATGATGCTGC
AGGTCGGAATTGGGCAATTCAAGCTGTGAGTTCGGACGATAAGAATTATACGATGCTACTTACGAGTACAGGGATGCGTT
GTAAGAATAAAACTACAGCAAATGTTGATTTTGAGAGCTGTGGCAGTACTGCAAATGGTAGTGAGGAGTGGTAA
ATGAAAAAAATAATAAAGTCCTCTGGATTTACATTGATAGAACTAATGGTTGTTGTAGTAATTGTTGCGATTTTCGCAGC
AATTGCTATACCGTCATACCAAGAGTATGTACGACGCGCCGTAGCTAGTCAGGCACAACAAGAGATACAGCGATTAGCTA
CTTTGTTAGATCGGCATAAAGCGCGTAATTTTAGTTATCGAGGATTTACGACCACAAGTGCAGTATTACCTGTGGGAGCA
ACTGGCTCTGCGATTAAATATACATTGACGATCAGAGATGGAAATGATCCAGATTTGGATTTAACAGAGGATGATGCTGC
AGGTCGGAATTGGGCAATTCAAGCTGTGAGTTCGGACGATAAGAATTATACGATGCTACTTACGAGTACAGGGATGCGTT
GTAAGAATAAAACTACAGCAAATGTTGATTTTGAGAGCTGTGGCAGTACTGCAAATGGTAGTGAGGAGTGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Acinetobacter baylyi ADP1 |
50 |
100 |
0.529 |
| pilY2 | Acinetobacter baumannii D1279779 |
49.677 |
98.726 |
0.49 |