Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GAN20_RS00105 Genome accession   NZ_CP045085
Coordinates   18949..19836 (+) Length   295 a.a.
NCBI ID   WP_015729041.1    Uniprot ID   A0A8H9BY74
Organism   Staphylococcus pseudintermedius strain KCTC 43135     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 13949..24836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAN20_RS00080 ylqF 14333..15205 (+) 873 WP_015729037.1 ribosome biogenesis GTPase YlqF -
  GAN20_RS00085 - 15198..15983 (+) 786 WP_140241153.1 ribonuclease HII -
  GAN20_RS00090 - 16075..16350 (+) 276 WP_015729039.1 hypothetical protein -
  GAN20_RS00095 sucC 16617..17783 (+) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  GAN20_RS00100 sucD 17805..18710 (+) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  GAN20_RS00105 dprA 18949..19836 (+) 888 WP_015729041.1 DNA-processing protein DprA Machinery gene
  GAN20_RS00110 topA 19920..21989 (+) 2070 WP_014614088.1 type I DNA topoisomerase -
  GAN20_RS00115 trmFO 22017..23321 (+) 1305 WP_015729042.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GAN20_RS00120 xerC 23421..24332 (+) 912 WP_015729043.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33464.96 Da        Isoelectric Point: 8.4807

>NTDB_id=391736 GAN20_RS00105 WP_015729041.1 18949..19836(+) (dprA) [Staphylococcus pseudintermedius strain KCTC 43135]
MKQLLLLLLYAGFSTQQIQSCYPKLCALTGNLPQRIQAFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSANSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLSEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=391736 GAN20_RS00105 WP_015729041.1 18949..19836(+) (dprA) [Staphylococcus pseudintermedius strain KCTC 43135]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTGTTACCCTAAACTTTGTGC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCAATGCTTTCGCACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTGCTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGTTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

98.305

0.498
  dprA Staphylococcus aureus N315

50.345

98.305

0.495

Multiple sequence alignment