Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GAN19_RS09970 Genome accession   NZ_CP045084
Coordinates   2088706..2089593 (+) Length   295 a.a.
NCBI ID   WP_015729041.1    Uniprot ID   A0A8H9BY74
Organism   Staphylococcus pseudintermedius strain KCTC 43134     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2083706..2094593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAN19_RS09945 ylqF 2084090..2084962 (+) 873 WP_015729037.1 ribosome biogenesis GTPase YlqF -
  GAN19_RS09950 - 2084955..2085740 (+) 786 WP_140241153.1 ribonuclease HII -
  GAN19_RS09955 - 2085832..2086107 (+) 276 WP_015729039.1 hypothetical protein -
  GAN19_RS09960 sucC 2086374..2087540 (+) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  GAN19_RS09965 sucD 2087562..2088467 (+) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  GAN19_RS09970 dprA 2088706..2089593 (+) 888 WP_015729041.1 DNA-processing protein DprA Machinery gene
  GAN19_RS09975 topA 2089677..2091746 (+) 2070 WP_014614088.1 type I DNA topoisomerase -
  GAN19_RS09980 trmFO 2091774..2093078 (+) 1305 WP_015729042.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GAN19_RS09985 xerC 2093199..2094089 (+) 891 WP_037543179.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33464.96 Da        Isoelectric Point: 8.4807

>NTDB_id=391722 GAN19_RS09970 WP_015729041.1 2088706..2089593(+) (dprA) [Staphylococcus pseudintermedius strain KCTC 43134]
MKQLLLLLLYAGFSTQQIQSCYPKLCALTGNLPQRIQAFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSANSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLSEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=391722 GAN19_RS09970 WP_015729041.1 2088706..2089593(+) (dprA) [Staphylococcus pseudintermedius strain KCTC 43134]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTGTTACCCTAAACTTTGTGC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCAATGCTTTCGCACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTGCTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGTTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

98.305

0.498
  dprA Staphylococcus aureus N315

50.345

98.305

0.495

Multiple sequence alignment