Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   GAN19_RS01020 Genome accession   NZ_CP045084
Coordinates   184671..185387 (+) Length   238 a.a.
NCBI ID   WP_100006618.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain KCTC 43134     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 179671..190387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAN19_RS00995 - 181076..181879 (+) 804 WP_099987197.1 carbon-nitrogen family hydrolase -
  GAN19_RS01005 - 182636..183202 (+) 567 WP_140232597.1 accessory gene regulator AgrB -
  GAN19_RS01010 - 183204..183341 (+) 138 WP_063278585.1 cyclic lactone autoinducer peptide -
  GAN19_RS01015 - 183602..184657 (+) 1056 WP_233535950.1 sensor histidine kinase -
  GAN19_RS01020 agrA 184671..185387 (+) 717 WP_100006618.1 LytTR family DNA-binding domain-containing protein Regulator
  GAN19_RS01025 - 185447..186391 (-) 945 WP_115807334.1 carbohydrate kinase -
  GAN19_RS01030 - 186395..187879 (-) 1485 WP_063278588.1 sucrose-6-phosphate hydrolase -
  GAN19_RS01035 - 187935..188882 (-) 948 WP_063278589.1 LacI family DNA-binding transcriptional regulator -
  GAN19_RS12585 - 189220..189334 (+) 115 Protein_172 ribose transporter RbsU -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28016.18 Da        Isoelectric Point: 5.4368

>NTDB_id=391706 GAN19_RS01020 WP_100006618.1 184671..185387(+) (agrA) [Staphylococcus pseudintermedius strain KCTC 43134]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDEVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=391706 GAN19_RS01020 WP_100006618.1 184671..185387(+) (agrA) [Staphylococcus pseudintermedius strain KCTC 43134]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGAAGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

82.773

100

0.828

Multiple sequence alignment