Detailed information NTG0039169

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PAM18_RS06700
• Genome accession: NC_017548
• Coordinates: 1449004..1450008 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa M18
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1444004..1455008

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PAM18_RS06670 (PAM18_1318)	fghA	1444096..1444947 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PAM18_RS06675 (PAM18_1319)	ispF	1445018..1445491 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PAM18_RS06680 (PAM18_1320)	truD	1445488..1446555 (+)	1068	WP_014602573.1	tRNA pseudouridine(13) synthase TruD	-
PAM18_RS06685 (PAM18_1321)	surE	1446543..1447292 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PAM18_RS06690 (PAM18_1322)	-	1447325..1447960 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PAM18_RS06695	-	1448006..1448899 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PAM18_RS06700 (PAM18_1324)	rpoS	1449004..1450008 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PAM18_RS06705 (PAM18_1325)	fdxA	1450435..1450758 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PAM18_RS06710 (PAM18_1326)	mutS	1450825..1453404 (-)	2580	WP_003105609.1	DNA mismatch repair protein MutS	-
PAM18_RS06715 (PAM18_1327)	-	1453464..1454438 (-)	975	WP_014602574.1	tyrosine-type recombinase/integrase	-
PAM18_RS29365	-	1454448..1454657 (-)	210	WP_071538228.1	DUF4224 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=39169 PAM18_RS06700 WP_003113871.1 1449004..1450008(+) (rpoS) [Pseudomonas aeruginosa M18]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=39169 PAM18_RS06700 WP_003113871.1 1449004..1450008(+) (rpoS) [Pseudomonas aeruginosa M18]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653