Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HFELIS_RS01025 Genome accession   NC_014810
Coordinates   190680..191264 (+) Length   194 a.a.
NCBI ID   WP_013468679.1    Uniprot ID   E7AD42
Organism   Helicobacter felis ATCC 49179     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 185680..196264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFELIS_RS01000 (HFELIS_02180) - 186559..188439 (+) 1881 WP_013468674.1 ATP-dependent helicase -
  HFELIS_RS01005 (HFELIS_02190) flgA 188421..189092 (+) 672 WP_013468675.1 flagellar basal body P-ring formation chaperone FlgA -
  HFELIS_RS01010 (HFELIS_02200) - 189089..189655 (+) 567 WP_013468676.1 UbiX family flavin prenyltransferase -
  HFELIS_RS01015 (HFELIS_02210) coaD 189649..190143 (+) 495 WP_013468677.1 pantetheine-phosphate adenylyltransferase -
  HFELIS_RS01020 (HFELIS_02220) tmk 190127..190699 (+) 573 WP_013468678.1 dTMP kinase -
  HFELIS_RS01025 (HFELIS_02230) comFC 190680..191264 (+) 585 WP_013468679.1 ComF family protein Machinery gene
  HFELIS_RS01030 (HFELIS_02240) - 191254..192135 (-) 882 WP_013468680.1 response regulator -
  HFELIS_RS01035 (HFELIS_02250) ispF 192122..193348 (-) 1227 WP_013468681.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  HFELIS_RS01040 (HFELIS_02260) thiC 193507..194844 (+) 1338 WP_013468682.1 phosphomethylpyrimidine synthase ThiC -
  HFELIS_RS01045 (HFELIS_02270) - 194841..195209 (-) 369 WP_013468683.1 cytochrome c -
  HFELIS_RS01050 (HFELIS_02280) - 195267..196115 (+) 849 WP_013468684.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22045.72 Da        Isoelectric Point: 9.3085

>NTDB_id=39168 HFELIS_RS01025 WP_013468679.1 190680..191264(+) (comFC) [Helicobacter felis ATCC 49179]
MRCVLCESWTRPFNLVCARCDPLLEPQILVREVEGIAIYGFYLYEEIEMLLKSKYYDIGSRILILLARKAGHTFEQEIKP
SLQLPSKLQGIAIDDMPKRAYAHSAVILKGFCQASKLSALYNQLRATKNITYAGKSRDFRQNHPKGFTFKGVRGDYFLVD
DIFTTGTTMQQAIVTLEKAEARVHFGVVLAHAKH

Nucleotide


Download         Length: 585 bp        

>NTDB_id=39168 HFELIS_RS01025 WP_013468679.1 190680..191264(+) (comFC) [Helicobacter felis ATCC 49179]
ATGCGCTGTGTGCTCTGTGAGAGTTGGACACGCCCTTTTAATTTGGTGTGCGCACGCTGTGATCCCCTCTTAGAGCCCCA
AATTTTAGTGCGTGAAGTGGAGGGAATCGCCATTTATGGGTTTTACCTCTATGAAGAAATAGAAATGCTTTTAAAGAGTA
AGTATTATGATATTGGGAGTCGGATTTTAATTCTTTTAGCCCGCAAGGCAGGACACACTTTTGAACAAGAGATCAAGCCC
TCCTTGCAACTTCCCTCCAAACTTCAAGGAATCGCCATTGATGACATGCCCAAAAGGGCCTATGCGCATAGCGCGGTGAT
ACTTAAAGGGTTCTGCCAAGCAAGCAAGTTATCCGCCTTATATAACCAACTTAGAGCGACTAAAAATATCACCTATGCGG
GAAAGAGTCGCGATTTTCGCCAAAACCACCCTAAAGGTTTTACTTTTAAGGGCGTGAGGGGGGATTACTTTTTAGTGGAC
GATATTTTTACGACAGGAACGACTATGCAACAAGCCATTGTAACCTTAGAAAAGGCAGAGGCTAGGGTGCATTTTGGAGT
GGTGCTCGCCCACGCTAAACATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E7AD42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

48.454

100

0.485

Multiple sequence alignment