Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | GBN67_RS06635 | Genome accession | NZ_CP045051 |
| Coordinates | 1365046..1365447 (+) | Length | 133 a.a. |
| NCBI ID | WP_234963841.1 | Uniprot ID | - |
| Organism | Acinetobacter johnsonii strain AJ312 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1360046..1370447
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GBN67_RS06605 (GBN67_06615) | kdsB | 1360849..1361610 (+) | 762 | WP_130235075.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| GBN67_RS06610 (GBN67_06620) | - | 1361630..1362613 (+) | 984 | WP_234963837.1 | DNA polymerase III subunit delta' | - |
| GBN67_RS06615 (GBN67_06625) | - | 1362628..1362969 (+) | 342 | WP_234963839.1 | PilZ domain-containing protein | - |
| GBN67_RS06620 (GBN67_06630) | - | 1362996..1363769 (+) | 774 | WP_151835654.1 | TatD family hydrolase | - |
| GBN67_RS06625 (GBN67_06635) | - | 1363815..1364429 (+) | 615 | WP_183173133.1 | TetR/AcrR family transcriptional regulator | - |
| GBN67_RS06630 (GBN67_06640) | - | 1364442..1365011 (+) | 570 | WP_234963840.1 | type II secretion system protein | - |
| GBN67_RS06635 (GBN67_06645) | xcpV | 1365046..1365447 (+) | 402 | WP_234963841.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| GBN67_RS06640 (GBN67_06650) | xcpW | 1365444..1366064 (+) | 621 | WP_062032926.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| GBN67_RS06645 (GBN67_06655) | gspK | 1366143..1367093 (+) | 951 | WP_234963842.1 | type II secretion system minor pseudopilin GspK | - |
| GBN67_RS06650 (GBN67_06660) | - | 1367216..1367812 (+) | 597 | WP_004696854.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| GBN67_RS06655 (GBN67_06665) | ung | 1367854..1368567 (+) | 714 | WP_004696856.1 | uracil-DNA glycosylase | - |
| GBN67_RS06660 (GBN67_06670) | - | 1368564..1369685 (+) | 1122 | WP_058951874.1 | enoyl-CoA hydratase/isomerase family protein | - |
| GBN67_RS06665 (GBN67_06675) | tadA | 1369691..1370191 (+) | 501 | WP_234963843.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 133 a.a. Molecular weight: 14627.70 Da Isoelectric Point: 9.6943
>NTDB_id=391529 GBN67_RS06635 WP_234963841.1 1365046..1365447(+) (xcpV) [Acinetobacter johnsonii strain AJ312]
MKHYFINPRSGFTLLEVMVALAIFATAAVALTKVGIQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISANVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDGSQP
MKHYFINPRSGFTLLEVMVALAIFATAAVALTKVGIQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISANVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDGSQP
Nucleotide
Download Length: 402 bp
>NTDB_id=391529 GBN67_RS06635 WP_234963841.1 1365046..1365447(+) (xcpV) [Acinetobacter johnsonii strain AJ312]
ATGAAACATTATTTCATTAATCCTCGCTCAGGATTTACATTGCTGGAAGTGATGGTGGCGCTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTGGGTATCCAATATACTCAGTCTACAGCCCATGCCATCTTGCGTACCAAGGCACAATTTG
TTGCCTTGAATGAAATTTCTATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATTAGTGCTAATGTGCAACGCGTCAATGTACAGGTGAGCTT
GGTGAATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCAT
GA
ATGAAACATTATTTCATTAATCCTCGCTCAGGATTTACATTGCTGGAAGTGATGGTGGCGCTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTGGGTATCCAATATACTCAGTCTACAGCCCATGCCATCTTGCGTACCAAGGCACAATTTG
TTGCCTTGAATGAAATTTCTATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATTAGTGCTAATGTGCAACGCGTCAATGTACAGGTGAGCTT
GGTGAATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCAT
GA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
74.359 |
87.97 |
0.654 |