Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   GBN67_RS06640 Genome accession   NZ_CP045051
Coordinates   1365444..1366064 (+) Length   206 a.a.
NCBI ID   WP_062032926.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ312     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1360444..1371064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN67_RS06605 (GBN67_06615) kdsB 1360849..1361610 (+) 762 WP_130235075.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GBN67_RS06610 (GBN67_06620) - 1361630..1362613 (+) 984 WP_234963837.1 DNA polymerase III subunit delta' -
  GBN67_RS06615 (GBN67_06625) - 1362628..1362969 (+) 342 WP_234963839.1 PilZ domain-containing protein -
  GBN67_RS06620 (GBN67_06630) - 1362996..1363769 (+) 774 WP_151835654.1 TatD family hydrolase -
  GBN67_RS06625 (GBN67_06635) - 1363815..1364429 (+) 615 WP_183173133.1 TetR/AcrR family transcriptional regulator -
  GBN67_RS06630 (GBN67_06640) - 1364442..1365011 (+) 570 WP_234963840.1 type II secretion system protein -
  GBN67_RS06635 (GBN67_06645) xcpV 1365046..1365447 (+) 402 WP_234963841.1 type II secretion system minor pseudopilin GspI Machinery gene
  GBN67_RS06640 (GBN67_06650) xcpW 1365444..1366064 (+) 621 WP_062032926.1 type II secretion system minor pseudopilin GspJ Machinery gene
  GBN67_RS06645 (GBN67_06655) gspK 1366143..1367093 (+) 951 WP_234963842.1 type II secretion system minor pseudopilin GspK -
  GBN67_RS06650 (GBN67_06660) - 1367216..1367812 (+) 597 WP_004696854.1 6-pyruvoyl trahydropterin synthase family protein -
  GBN67_RS06655 (GBN67_06665) ung 1367854..1368567 (+) 714 WP_004696856.1 uracil-DNA glycosylase -
  GBN67_RS06660 (GBN67_06670) - 1368564..1369685 (+) 1122 WP_058951874.1 enoyl-CoA hydratase/isomerase family protein -
  GBN67_RS06665 (GBN67_06675) tadA 1369691..1370191 (+) 501 WP_234963843.1 tRNA adenosine(34) deaminase TadA -
  GBN67_RS06670 (GBN67_06680) - 1370267..1370698 (+) 432 WP_004696860.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23533.09 Da        Isoelectric Point: 5.3491

>NTDB_id=391530 GBN67_RS06640 WP_062032926.1 1365444..1366064(+) (xcpW) [Acinetobacter johnsonii strain AJ312]
MTKRSGFTLVELLVAIAIFAVLSALGWKVFDYLIKIKERNTQHEQRLGQLQEAYQQVLRDTVQIVPITANVAGQVQPAVM
LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQTGNDQPETSVLLDSVDQFQIMLLNPNEMAQWP
EVALSENDVTQAKILPRGLKINLTVNEVGYEWVFSLLNTDFLKQKN

Nucleotide


Download         Length: 621 bp        

>NTDB_id=391530 GBN67_RS06640 WP_062032926.1 1365444..1366064(+) (xcpW) [Acinetobacter johnsonii strain AJ312]
ATGACAAAACGCTCAGGCTTTACTTTGGTTGAGTTATTGGTGGCAATCGCGATTTTTGCTGTGCTTTCAGCTTTGGGTTG
GAAGGTTTTTGATTATCTGATCAAGATTAAAGAGCGTAATACCCAACATGAACAGCGCTTAGGTCAACTACAAGAAGCAT
ATCAACAAGTGTTACGTGACACTGTGCAAATTGTACCAATTACTGCCAATGTTGCGGGGCAGGTTCAACCCGCAGTCATG
TTGCAAAATGGTCAGTTAACCTTTAGTAAAACTGGCGTGACTGATCCTTTAATGCAAGGCATACCGCCTGAAGAGCGAGT
TGAATATATTTATAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAACCGGTAATGATCAAC
CTGAAACCAGTGTTCTACTTGATTCAGTTGATCAATTTCAAATTATGTTACTCAATCCCAATGAAATGGCACAATGGCCT
GAGGTGGCATTGAGTGAAAATGATGTAACTCAGGCAAAAATACTACCGCGCGGTTTAAAAATAAACCTCACTGTCAATGA
GGTGGGTTATGAATGGGTGTTTAGTTTATTAAATACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-189)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.706

97.573

0.573

Multiple sequence alignment