Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GBN67_RS01030 Genome accession   NZ_CP045051
Coordinates   214412..215059 (-) Length   215 a.a.
NCBI ID   WP_234963397.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ312     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 209412..220059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN67_RS00995 (GBN67_01000) mlaE 209755..210534 (+) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  GBN67_RS01000 (GBN67_01005) - 210534..211208 (+) 675 WP_004691366.1 outer membrane lipid asymmetry maintenance protein MlaD -
  GBN67_RS01005 (GBN67_01010) - 211229..211864 (+) 636 WP_004691364.1 phospholipid-binding protein MlaC -
  GBN67_RS01010 (GBN67_01015) - 211876..212163 (+) 288 WP_004691363.1 lipid asymmetry maintenance protein MlaB -
  GBN67_RS01015 (GBN67_01020) - 212245..213258 (-) 1014 WP_004691361.1 CorA family divalent cation transporter -
  GBN67_RS01020 (GBN67_01025) - 213411..214010 (+) 600 WP_234963395.1 TIGR00730 family Rossman fold protein -
  GBN67_RS01025 (GBN67_01030) - 214007..214411 (+) 405 WP_234963396.1 NUDIX hydrolase -
  GBN67_RS01030 (GBN67_01035) comF 214412..215059 (-) 648 WP_234963397.1 ComF family protein Machinery gene
  GBN67_RS01035 (GBN67_01040) recG 215046..217091 (-) 2046 WP_234963398.1 ATP-dependent DNA helicase RecG -
  GBN67_RS01040 (GBN67_01045) - 217125..217940 (+) 816 WP_234963399.1 NAD-dependent epimerase/dehydratase family protein -
  GBN67_RS01045 (GBN67_01050) - 218132..218365 (+) 234 WP_029575124.1 DUF6500 family protein -
  GBN67_RS01050 (GBN67_01055) - 218550..218927 (+) 378 WP_029575123.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24911.13 Da        Isoelectric Point: 9.4139

>NTDB_id=391520 GBN67_RS01030 WP_234963397.1 214412..215059(-) (comF) [Acinetobacter johnsonii strain AJ312]
MPMFSHLLHTAKQLLHKAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTIEKKELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQFNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYAKRYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=391520 GBN67_RS01030 WP_234963397.1 214412..215059(-) (comF) [Acinetobacter johnsonii strain AJ312]
ATGCCTATGTTTAGTCATTTACTGCACACCGCCAAACAGTTGCTCCACAAAGCACAGCCTTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTGCACTCGGTCTGTCTGGACTGCTGGCAACAACTCCCACTACATCCACAAACCATTGAAAAAAAAGAGC
TGAGTATTCATGTCGCAGGGCAGTATCAATATCCTTTAGATCATCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTCTTCAGCAAATTCGCTTACCTAAAGTACAAGCAATTGTTCCTATGCCGATTTCGAC
TCAGCGTTTAGCGGAACGTGGCTATAACCAATCAATGATTCTCGCCAAAGACTTAGCCAAGCAGTTCAATGTTCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTACGCAAAACGCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

58.247

90.233

0.526
  comF Acinetobacter baumannii D1279779

58.247

90.233

0.526

Multiple sequence alignment