Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   F1716_RS08470 Genome accession   NZ_CP045048
Coordinates   1569468..1570649 (-) Length   393 a.a.
NCBI ID   WP_057041182.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain NADC 20827     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1564468..1575649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1716_RS08440 (F1716_08495) - 1565012..1565353 (+) 342 WP_002784057.1 hypothetical protein -
  F1716_RS08445 (F1716_08500) flgM 1565416..1565613 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  F1716_RS08450 (F1716_08505) - 1565656..1566090 (+) 435 WP_002779263.1 flagellar protein FlgN -
  F1716_RS08455 (F1716_08510) flgK 1566100..1567926 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  F1716_RS08460 (F1716_08515) - 1567943..1568707 (+) 765 WP_002918633.1 TIGR02757 family protein -
  F1716_RS08465 (F1716_08520) - 1568711..1569481 (+) 771 WP_004314270.1 TSUP family transporter -
  F1716_RS08470 (F1716_08525) ctsF 1569468..1570649 (-) 1182 WP_057041182.1 type II secretion system F family protein Machinery gene
  F1716_RS08475 (F1716_08530) ctsE 1570646..1572205 (-) 1560 WP_079862496.1 GspE/PulE family protein Machinery gene
  F1716_RS08480 (F1716_08535) ctsX 1572195..1572782 (-) 588 WP_070317373.1 transformation system protein Machinery gene
  F1716_RS08485 (F1716_08540) ctsP 1572786..1573394 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  F1716_RS08490 (F1716_08545) ctsD 1573387..1574799 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  F1716_RS08495 (F1716_08550) ctsR 1574777..1575088 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45715.36 Da        Isoelectric Point: 8.8933

>NTDB_id=391507 F1716_RS08470 WP_057041182.1 1569468..1570649(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
MKFYEVEFLKNNQNYTKTIKAENLNIAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIKE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=391507 F1716_RS08470 WP_057041182.1 1569468..1570649(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATATAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTCATACTCTTTTTTAAAGAGCTGGCTTTATTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAAAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.469

99.746

0.982

Multiple sequence alignment