Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   F1716_RS08495 Genome accession   NZ_CP045048
Coordinates   1574777..1575088 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni strain NADC 20827     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1569777..1580088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1716_RS08475 (F1716_08530) ctsE 1570646..1572205 (-) 1560 WP_079862496.1 GspE/PulE family protein Machinery gene
  F1716_RS08480 (F1716_08535) ctsX 1572195..1572782 (-) 588 WP_070317373.1 transformation system protein Machinery gene
  F1716_RS08485 (F1716_08540) ctsP 1572786..1573394 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  F1716_RS08490 (F1716_08545) ctsD 1573387..1574799 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  F1716_RS08495 (F1716_08550) ctsR 1574777..1575088 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  F1716_RS08500 (F1716_08555) nifJ 1575112..1578672 (-) 3561 WP_070317372.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  F1716_RS08505 (F1716_08560) - 1578766..1579407 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=391512 F1716_RS08495 WP_002855438.1 1574777..1575088(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=391512 F1716_RS08495 WP_002855438.1 1574777..1575088(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment