Detailed information NTG0391306

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: HLY12_RS16325
• Genome accession: NZ_CP053259
• Coordinates: 3468611..3469885 (-)
• Length: 424 a.a.
• NCBI ID: WP_060616553.1
• Uniprot ID: -
• Organism: Escherichia coli strain GF3-3
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3463611..3474885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HLY12_RS16315 (HLY12_16325)	hupB	3465588..3465860 (-)	273	WP_001043542.1	nucleoid-associated protein HU-beta	-
HLY12_RS16320 (HLY12_16330)	lon	3466069..3468423 (-)	2355	WP_001295325.1	endopeptidase La	-
HLY12_RS16325 (HLY12_16335)	clpX	3468611..3469885 (-)	1275	WP_060616553.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
HLY12_RS16330 (HLY12_16340)	clpP	3470011..3470634 (-)	624	WP_000122253.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
HLY12_RS16335 (HLY12_16345)	tig	3470880..3472178 (-)	1299	WP_001198386.1	trigger factor	-
HLY12_RS16340 (HLY12_16350)	bolA	3472522..3472839 (-)	318	WP_000973448.1	transcriptional regulator BolA	-
HLY12_RS16345 (HLY12_16355)	yajG	3473144..3473722 (+)	579	WP_001295326.1	lipoprotein	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 46328.94 Da
• Isoelectric Point: 4.9280

>NTDB_id=391306 HLY12_RS16325 WP_060616553.1 3468611..3469885(-) (clpX) [Escherichia coli strain GF3-3]
MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIG
QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT
SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEE
ALIQILTEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDE
SVIDGQSKPLLIYGKPEAQQASGE

Nucleotide

• Length: 1275 bp

>NTDB_id=391306 HLY12_RS16325 WP_060616553.1 3468611..3469885(-) (clpX) [Escherichia coli strain GF3-3]
ATGACAGATAAACGCAAAGATGGCTCAGGCAAATTGCTGTATTGCTCTTTTTGCGGCAAAAGCCAGCATGAAGTGCGCAA
GCTGATTGCCGGTCCATCCGTGTATATCTGCGACGAATGTGTTGATTTATGTAACGACATCATTCGCGAAGAGATTAAAG
AAGTTGCACCGCATCGTGAACGCAGTGCGCTACCGACGCCGCATGAAATTCGCAACCACCTGGACGATTACGTTATCGGC
CAGGAACAGGCGAAAAAAGTGCTGGCGGTCGCGGTATACAACCATTACAAACGTCTGCGCAACGGCGATACCAGCAATGG
TGTCGAGTTGGGCAAAAGTAACATTCTGCTGATCGGTCCGACCGGTTCCGGTAAAACGCTGCTGGCTGAAACGCTGGCGC
GCCTGCTGGACGTCCCGTTCACCATGGCCGACGCAACCACGCTGACCGAAGCCGGTTATGTGGGCGAAGACGTTGAAAAC
ATCATTCAGAAGCTGTTGCAAAAGTGCGATTACGACGTACAGAAAGCGCAGCGCGGGATTGTCTACATCGATGAAATCGA
CAAGATTTCTCGTAAGTCAGACAACCCGTCTATTACCCGTGACGTTTCCGGTGAAGGCGTACAGCAGGCACTGTTGAAAC
TGATCGAAGGTACGGTAGCTGCTGTTCCACCGCAAGGTGGGCGTAAACATCCGCAGCAGGAATTCTTGCAGGTTGATACC
TCTAAGATCCTGTTTATTTGTGGCGGTGCGTTTGCCGGTCTGGATAAAGTGATTTCCCATCGTGTAGAAACCGGCTCCGG
CATTGGTTTTGGCGCGACGGTAAAAGCGAAGTCCGACAAAGCAAGCGAAGGCGAGCTGCTGGCGCAGGTTGAACCGGAAG
ATCTGATCAAGTTTGGTCTTATCCCTGAGTTTATTGGTCGTCTGCCGGTTGTCGCAACGTTGAATGAACTGAGCGAAGAA
GCTCTGATTCAGATCCTCACAGAGCCGAAAAATGCCCTGACCAAGCAGTATCAGGCGCTGTTTAATCTGGAAGGCGTGGA
TCTGGAATTCCGTGACGAGGCTCTGGATGCTATCGCTAAGAAAGCGATGGCGCGTAAAACCGGTGCCCGTGGCCTGCGTT
CCATCGTAGAAGCCGCACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGATGTCGAAAAAGTGGTTATCGACGAG
TCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (112-310)

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-50)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.1	94.575	0.568
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.637	96.226	0.535