Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LG542_RS05485 Genome accession   NZ_CP045007
Coordinates   1117684..1119759 (-) Length   691 a.a.
NCBI ID   WP_226789452.1    Uniprot ID   -
Organism   Latilactobacillus graminis strain LG542     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1112684..1124759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG542_RS05465 (LG542_05470) - 1113523..1115241 (-) 1719 WP_057907883.1 ribonuclease J -
  LG542_RS05470 (LG542_05475) rpsO 1115444..1115713 (-) 270 WP_057907884.1 30S ribosomal protein S15 -
  LG542_RS05475 (LG542_05480) rpsT 1115989..1116243 (+) 255 WP_057907885.1 30S ribosomal protein S20 -
  LG542_RS05480 (LG542_05485) holA 1116655..1117683 (-) 1029 WP_057907886.1 DNA polymerase III subunit delta -
  LG542_RS05485 (LG542_05490) comEC 1117684..1119759 (-) 2076 WP_226789452.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LG542_RS05490 (LG542_05495) - 1119945..1120433 (-) 489 WP_057907888.1 ComE operon protein 2 -
  LG542_RS05495 (LG542_05500) comEA 1120495..1121175 (-) 681 WP_057907889.1 helix-hairpin-helix domain-containing protein Machinery gene
  LG542_RS05500 (LG542_05505) - 1121252..1122298 (-) 1047 WP_057907890.1 SepM family pheromone-processing serine protease -
  LG542_RS05505 (LG542_05510) coaD 1122300..1122794 (-) 495 WP_057907891.1 pantetheine-phosphate adenylyltransferase -
  LG542_RS05510 (LG542_05515) rsmD 1122806..1123360 (-) 555 WP_057907892.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LG542_RS05515 (LG542_05520) - 1123366..1123656 (-) 291 WP_057907893.1 YlbG family protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 78250.57 Da        Isoelectric Point: 9.5083

>NTDB_id=391201 LG542_RS05485 WP_226789452.1 1117684..1119759(-) (comEC) [Latilactobacillus graminis strain LG542]
MARCTYIQPVTPHNQIYKIQPDTIKVAGNQIQLIAQGQTDGQLIIGYYRCKNQIEQHRWQTESWPLLLIGDIELERIEGA
TNRHEFDYAQFMGQQKQCFYQTRMADNTIIKQIQPQGWLDTLHHWRQKGLIYLHRLPPALRFHAGALLLGVRETDGKVYQ
NVLGQLGIIHLLSLSGIHVFYLVTIIRRVATLCRVPREWVNGGLCCLLPIYALFVGGGTSIVRAIGLILLRLVCEMGHLH
QSRLDSWSWVLLVNLLWQPYLLLSMGGLLSYLMAFALIYQWRNGTFATTFWLGLLSLPVCLRFNYRWHMLTILINGLIAP
IFLPITLGLVIVAILLLPFSYPLVLLGEGFLNNLYQGLAWIAGLPHATVTFGKIQLVPLFLIVVGTLWLMAEPTNKQRVK
WIGSSIVSLYMLSFIIIHFNPVGRVIMFDIGQGDSLLIQQPFNRHNLLIDTGGRLSLPQKKWQRRVITSRAEKVTINYLY
SCGIDHLDAIALSHQDADHIGDLGQIMQRIRVKRLICAAGLPQNQQFKRQVRPYLKTVIIEPYLAGQHFTVGQQQINVLA
PVIAGTGTNADSLVLQAQIGDASWLFTGDLERVGEIDITHRYPQLRVDYLKVGHHGSQTASAPQAIAAWHVKGALISAGR
HNRYGHPHPQTIQTLQQANVPFWNTAECGMLEWQYGWGLRTTIKTTLKDCD

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=391201 LG542_RS05485 WP_226789452.1 1117684..1119759(-) (comEC) [Latilactobacillus graminis strain LG542]
TTGGCACGATGTACTTATATACAACCGGTTACACCGCATAATCAGATTTACAAAATTCAACCAGATACGATAAAGGTTGC
TGGAAATCAAATTCAGTTAATCGCACAAGGGCAAACTGACGGGCAGCTCATTATTGGTTATTACCGCTGCAAAAACCAAA
TTGAGCAACATCGTTGGCAAACAGAGAGCTGGCCGCTATTGTTAATTGGTGATATTGAGCTGGAACGAATTGAAGGAGCG
ACTAATCGTCATGAATTCGATTATGCTCAATTTATGGGGCAACAGAAACAGTGCTTTTATCAGACCCGGATGGCAGATAA
CACAATCATCAAGCAAATTCAGCCGCAGGGTTGGTTGGACACGTTGCATCATTGGCGGCAAAAGGGGCTTATTTATTTAC
ACCGACTACCGCCAGCTTTACGGTTTCACGCAGGGGCTTTATTGTTAGGTGTCCGTGAGACGGATGGGAAGGTTTATCAA
AACGTTCTAGGGCAACTAGGCATTATCCATTTATTGAGTTTGTCAGGGATTCACGTTTTCTATCTAGTAACAATCATTCG
ACGAGTAGCAACTCTTTGTCGAGTGCCACGAGAATGGGTAAATGGCGGTCTGTGTTGTTTATTGCCTATCTATGCGCTGT
TTGTAGGAGGCGGTACAAGTATCGTTCGTGCCATTGGGTTAATTTTATTAAGGCTAGTATGCGAAATGGGTCATTTGCAT
CAGTCGCGCTTAGATAGTTGGAGTTGGGTATTATTAGTTAATTTACTGTGGCAACCTTATTTATTATTAAGTATGGGTGG
GTTATTAAGTTATCTGATGGCGTTTGCTCTTATCTATCAATGGCGTAATGGTACTTTTGCGACCACCTTTTGGTTAGGGT
TGTTGAGCTTGCCAGTCTGTTTACGATTTAATTATCGTTGGCATATGTTGACGATTTTAATCAATGGCTTGATAGCCCCC
ATTTTTTTACCAATAACATTGGGGCTAGTTATCGTTGCTATTTTATTGCTGCCCTTTAGTTATCCATTAGTTTTATTAGG
AGAGGGATTTCTTAATAACCTCTATCAGGGACTTGCTTGGATAGCAGGCTTGCCGCATGCCACAGTTACCTTCGGCAAAA
TACAACTAGTACCACTATTTTTGATTGTGGTAGGTACACTATGGCTAATGGCAGAGCCCACTAATAAACAGCGGGTTAAA
TGGATTGGGAGTAGTATTGTTAGTTTGTATATGTTAAGTTTTATCATTATTCACTTTAATCCAGTTGGACGGGTGATTAT
GTTTGATATTGGCCAGGGTGATAGCCTACTCATTCAACAGCCGTTTAACCGGCATAATTTATTGATTGATACTGGGGGGC
GACTTTCCTTACCGCAAAAAAAATGGCAGCGGCGTGTGATTACTAGCCGTGCCGAAAAAGTAACGATTAATTATCTCTAT
AGTTGTGGAATCGATCACTTAGATGCAATTGCGTTGTCGCACCAGGATGCGGATCATATTGGTGATTTGGGTCAAATCAT
GCAACGAATTCGGGTCAAACGCTTAATCTGTGCGGCGGGCTTACCCCAAAACCAGCAATTTAAACGACAAGTTCGTCCTT
ACCTGAAAACAGTCATCATTGAGCCTTATCTGGCCGGTCAGCACTTTACTGTAGGGCAGCAACAAATTAATGTTTTAGCA
CCGGTGATAGCTGGAACAGGGACAAATGCTGATTCATTAGTTTTACAGGCTCAAATTGGTGATGCAAGTTGGTTATTTAC
GGGGGATTTAGAACGCGTGGGCGAAATTGACATTACCCATCGTTACCCACAATTACGGGTCGATTATTTAAAGGTGGGGC
ACCATGGTAGTCAAACGGCGAGTGCGCCACAAGCAATTGCAGCTTGGCATGTAAAGGGGGCCTTGATTTCCGCGGGCCGC
CATAATCGCTATGGTCATCCGCATCCGCAAACTATTCAAACTTTACAGCAGGCTAACGTTCCATTTTGGAATACCGCGGA
ATGCGGGATGCTGGAATGGCAATACGGTTGGGGATTACGTACAACAATTAAAACAACTTTAAAGGATTGTGACTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(147-391)

Metallo-beta-lactamase superfamily (Lactamase_B)

(431-639)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

62.774

99.132

0.622

Multiple sequence alignment